junba (junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464)


Basic Information

Item Value
gene id junba
gene name junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25577222 ~ 25578799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234897.1
TCTCGCAAGACCGAGTGCGCGCCGAGACAGAAGACTCCGCGTACGGCCGTTTGTAAATAACTGTCCCGGAACGCGACTTTTTGGACATCAGCTGTCAAGGGAAAACACCTGTCTGCTTGGTACAGTAAAGTTGTTCAAACTATTTTGGAAGTTTCTTTTGCTCTCTTTGACATCTTCATGTAATATTACGGAGAGAACAAGATTTGCGGACAGTAAAGTGTACAGTCAACTCAAAAAGCCTCCAACCTAATTGCTATTCACATGTCAACAAAAATGGAGCAACCGTTTTATCATGACGACTCGTTTCTTTCTGCTTATGGTCATCCAGACGCTGCCCTGCACGACTACAAGCTCCTAAAGCAGAACATGAGCGTGGGCTTCGCCGAACCTTACCGGAACCTCAAGTCCCTGCGCTCCGAAAGCGACTTCTACACCGGAGACGTGGGCTCGCTGAAACTCGCCTCTCCGGAGCTGGAGAGACTCATCATCCAGAACGGTAACGGTGTCATCACATCACCCACCCCGGGGCAGTATCTGTACGGTCGGGGCATCACAGAGGAGCAGGAGGGCTTCGCGGACGGCTTCGTAAAAGCGCTGGACGAGCTCCACAAAATGAACCAGATGCCCCCGCCGAACGTCTCCATCGGCGCCGGCGGCGTGTCGTCCTGCTCGGCCGCGTCGTCGGTCTTCGGCGCCTCGCTGCAACCGGAGAGCCCCGTGTACACCACCCTGAACAGCTGCAATCCCAACACTAACCACACACCCGCGGCCAACTACCCGACGGCAACCATCAGCTACCTGCctcaccatcaccatcatcaccaccaccaaCAGTACCATCACCACCAAGCCACGACGCACCCTCACCCCTTCCAGCACTCGCTCCATCCGCAGCGGCTTGTCTCGCTCAAAGAGGAGCCGCAGACCGTGCCCGACCTGCAGAGCAGCGACGGCTCTCCTCCCATGTCCCCCATCGACATGGAGGACCAGGAGCGCATCAAAGCGGAGCGCAAGAGGCTGCGCAACCGGCTGGCGGCCACCAAGTGCCGGCGACGGAAGCTGGAGCGCATCTCCAGGCTGGAGGACAAAGTCAAGGTGCTCAAGTCTGATAACGCCGGACTGTCCAGCACCGCGTCCCTACTGAGGGAGCAGGTCGCCCAGCTAAAGCAGAAGGTCATGACCCACGTGAGCAGCGGGTGCCAGCTGATGCTGACGCCCAAGATCAAGTCGTTTTAGATGCGAACCGCAATGACTCGGACACTGGCGAAACGGGAAACACTGGAAGCGCAGATcatgtttgttatgttttgaTGCAAATGATACTATTGCAGCACTGGGTACGagcgttgtatatttaagtgttttcttGTAGAAAACTAGATCGTTAAAGTTGTTTTCAAAAGCATCTCTTCGAGGTGGATGCACAGGGAAAACCTCTaagtttggttttgtttttgagtcCTGCCCTATGAAAACATTCCAGTAAGTTATTGATGTTGTGAGTCGGGTTGATCCAGACCTGTActtctgtctgttttgtttatattttttatatttaagtaaaagcGTTGAAAACAA

Function

symbol description
junba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within heart contraction and lymph vessel development. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including brain; digestive system; eye; periderm; and solid lens vesicle. Orthologous to human JUNB (JunB proto-oncogene, AP-1 transcription factor subunit).

NR:

description
transcription factor jun-B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031101 fin regeneration biological_process
GO:0060047 heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09028 JUNB; transcription factor jun-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234897.1 True 1578 mRNA 0.53 1 25577222 25578799

Neighbor

gene id symbol gene type direction distance location
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding downstream 8311 25564387 ~ 25568911 (-)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 13367 25561561 ~ 25563855 (-)
LOC122351449 fbxo48,LOC107747422,LOC107594409,LOC107675512,LOC107583249,LOC107684254 coding downstream 47682 25527479 ~ 25529540 (-)
cnrip1a cnrip1a,LOC107676313,LOC107684253,LOC107594460,LOC107583248,LOC108258529 coding downstream 50780 25523367 ~ 25526442 (-)
ppp3r1b PPP3R1,ppp3r1,ppp3r1a,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 54852 25509574 ~ 25522370 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding upstream 108998 25687797 ~ 25701284 (-)
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding upstream 128025 25706824 ~ 25713974 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding upstream 137359 25716158 ~ 25727538 (-)
aptx aptx,LOC107757069,LOC107746089 coding upstream 231080 25809879 ~ 25813849 (-)
il15 LOC107730128 coding upstream 490377 26069176 ~ 26076862 (-)
G6165 NA non-coding downstream 72368 25503940 ~ 25504854 (-)
G6118 NA non-coding downstream 149286 25283375 ~ 25427936 (-)
G6132 NA non-coding downstream 190646 25386177 ~ 25386576 (-)
G6125 NA non-coding downstream 260534 25314516 ~ 25316688 (-)
G6104 NA non-coding downstream 318915 25253397 ~ 25258307 (-)
G6200 NA non-coding upstream 41447 25620246 ~ 25620504 (-)
G6201 NA non-coding upstream 42635 25621434 ~ 25621745 (-)
G6223 NA non-coding upstream 157998 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 190108 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 257139 25835938 ~ 25844994 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 20240 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 174867 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 177205 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 269251 25304597 ~ 25307971 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 443063 25132003 ~ 25134159 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 135303 25714102 ~ 25715704 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 252525 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 551989 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 838060 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 875451 26454250 ~ 26523402 (-)

Expression


Co-expression Network