rnaseh2a (rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201)


Basic Information

Item Value
gene id rnaseh2a
gene name rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25564387 ~ 25568911 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234909.1
CATCTACTTTTACTATCGTAATGTCGGTCAAAGGTCACGCGGTCCTGTCACTCTCGCGCCAATTCTGTATTTCCGGTTGAGGCGCGCTGCAAACACAGATGATCAGGCATGGATCTGAGTGATTTTGAGGTGGATAACTCTGTGAGCTGCCGCTTGTCCTCGCCCATCCCGGACACGTGTAAGACAGAGGACTGCTGCCTGGGCATCGATGAGGCGGGCAGGGGTCCCGTACTGGGACCCATGGTGTACGGGATATGCTTCTGCCCCGTATCCAGAAAGGAAGACCTGAAGACTTTGAAAGTGGCAGACTCGAAGACGCTGACGGAGGCCGAGAGGGAGAATCTGTTTCTGAAGCTCGACGAGGCCAGAGATTTTGTAGGCTGGGCCCTACAGGTCCTCTCACCAAACACCATTTCCACCAGCATGCTGCAGAGaGCAAAATACAATCTCAATGCGCTGTCACATGATGCTGCTATTGGTCTGGTACAGTACGCCCTGGACTGTGGGGTGCAGCTTAAAGAGGTGTTTGTGGATACTGTGGGTCCTGCAGAAAAGTATCAGGAAAAGCTCTCCCAGCGCTTCCCGGGGGTGGAGGTCACTGTCCGCCCCAAAGCTGACTCGCTCTTCCCCGTCGTCAGTGCTGCCAGCATCTGTGCCAAGgTGGCTAGAGACCATGCTGTCAAATCCTGGAAATTTGCAGAAGATTTGGGTAACGTGGACACAGATTACGGCTCTGGGTATCCTAACGatcCCAAAACGAAGAGCTGGCTGCTGAAGTATCTGGACCCAGTGTTTGGTTATCCTCAGTTTGTGAGGTTCAGCTGGAGCACGGCGCAGACGCTCATGGACAGTAAAGCTGTTGCCGTTCACTGggacGATGATGAGGAAGACGGAGAAAAAGCCGCTGCTCGTCGGAATAATACCTCCATGTTGTCGTATTTCAGCCGCAGCAAGCCGCCGGAGCTCGCGCACACACGAGACGCACACCGCTTTTTCACTGAGCGCAAACTACAGAGCATCGACTCGCTCTGAATACAAACACGGACCGTCACTGGGAGCCAAGCTCAAACATATCACATGTATCACGAATACACGTCAGCTGGATGTGAACAACATTGTATCGCAAAATAATCGGTTGTGCGTGAACCAGAATGTATCGTATTCTCATCTGTGTTTTTATGGCGTGCATTGTTCATTTCTGCATGTAAAATAAAggaattgtttttcattttca
>XM_043234919.1
TTACTTTCCtgtaatgcaaataaacatgctGAATTAGTAGATACAGTcggaaaaataacaaaaatgtcttCTGAACTCCATTTCCCAAAAACCACTGCGGCAGAGACTTTTGGAGTCACTTTTAAAAGCGCTCGCCTCATGGTTTTAGACCTTTATCTGTGTATTTAAACATGTTTCGCCGTGCATCCTATTTTTCTACACAGTAATAAATACTCGTTGTCCTTTTAGTAATGTCGGTCAAAGGTCACGCGGTCCTGTCACTCTCGCGCCAATTCTGTATTTCCGGTTGAGGCGCGCTGCAAACACAGATGATCAGGCATGGATCTGAGTGATTTTGAGGTGGATAACTCTGTGAGCTGCCGCTTGTCCTCGCCCATCCCGGACACGTGTAAGACAGAGGACTGCTGCCTGGGCATCGATGAGGCGGGCAGGGGTCCCGTACTGGGACCCATGGTGTACGGGATATGCTTCTGCCCCGTATCCAGAAAGGAAGACCTGAAGACTTTGAAAGTGGCAGACTCGAAGACGCTGACGGAGGCCGAGAGGGAGAATCTGTTTCTGAAGCTCGACGAGGCCAGAGATTTTGTAGGCTGGGCCCTACAGGTCCTCTCACCAAACACCATTTCCACCAGCATGCTGCAGAGaGCAAAATACAATCTCAATGCGCTGTCACATGATGCTGCTATTGGTCTGGTACAGTACGCCCTGGACTGTGGGGTGCAGCTTAAAGAGGTGTTTGTGGATACTGTGGGTCCTGCAGAAAAGTATCAGGAAAAGCTCTCCCAGCGCTTCCCGGGGGTGGAGGTCACTGTCCGCCCCAAAGCTGACTCGCTCTTCCCCGTCGTCAGTGCTGCCAGCATCTGTGCCAAGgTGGCTAGAGACCATGCTGTCAAATCCTGGAAATTTGCAGAAGATTTGGGTAACGTGGACACAGATTACGGCTCTGGGTATCCTAACGatcCCAAAACGAAGAGCTGGCTGCTGAAGTATCTGGACCCAGTGTTTGGTTATCCTCAGTTTGTGAGGTTCAGCTGGAGCACGGCGCAGACGCTCATGGACAGTAAAGCTGTTGCCGTTCACTGggacGATGATGAGGAAGACGGAGAAAAAGCCGCTGCTCGTCGGAATAATACCTCCATGTTGTCGTATTTCAGCCGCAGCAAGCCGCCGGAGCTCGCGCACACACGAGACGCACACCGCTTTTTCACTGAGCGCAAACTACAGAGCATCGACTCGCTCTGAATACAAACACGGACCGTCACTGGGAGCCAAGCTCAAACATATCACATGTATCACGAATACACGTCAGCTGGATGTGAACAACATTGTATCGCAAAATAATCGGTTGTGCGTGAACCAGAATGTATCGTATTCTCATCTGTGTTTTTATGGCGTGCATTGTTCATTTCTGCATGTAAAATAAAggaattgtttttcattttca
>XM_043234928.1
CGCGCTGCAAACACAGGTTCGTGCGACTTTGTTTATGCGGCAGCTTTCAAACACTTTAATGGTTGAGCACATTGTCCTATGGTTCTTTTGAATACCATGATGATCAGGCATGGATCTGAGTGATTTTGAGGTGGATAACTCTGTGAGCTGCCGCTTGTCCTCGCCCATCCCGGACACGTGTAAGACAGAGGACTGCTGCCTGGGCATCGATGAGGCGGGCAGGGGTCCCGTACTGGGACCCATGGTGTACGGGATATGCTTCTGCCCCGTATCCAGAAAGGAAGACCTGAAGACTTTGAAAGTGGCAGACTCGAAGACGCTGACGGAGGCCGAGAGGGAGAATCTGTTTCTGAAGCTCGACGAGGCCAGAGATTTTGTAGGCTGGGCCCTACAGGTCCTCTCACCAAACACCATTTCCACCAGCATGCTGCAGAGaGCAAAATACAATCTCAATGCGCTGTCACATGATGCTGCTATTGGTCTGGTACAGTACGCCCTGGACTGTGGGGTGCAGCTTAAAGAGGTGTTTGTGGATACTGTGGGTCCTGCAGAAAAGTATCAGGAAAAGCTCTCCCAGCGCTTCCCGGGGGTGGAGGTCACTGTCCGCCCCAAAGCTGACTCGCTCTTCCCCGTCGTCAGTGCTGCCAGCATCTGTGCCAAGgTGGCTAGAGACCATGCTGTCAAATCCTGGAAATTTGCAGAAGATTTGGGTAACGTGGACACAGATTACGGCTCTGGGTATCCTAACGatcCCAAAACGAAGAGCTGGCTGCTGAAGTATCTGGACCCAGTGTTTGGTTATCCTCAGTTTGTGAGGTTCAGCTGGAGCACGGCGCAGACGCTCATGGACAGTAAAGCTGTTGCCGTTCACTGggacGATGATGAGGAAGACGGAGAAAAAGCCGCTGCTCGTCGGAATAATACCTCCATGTTGTCGTATTTCAGCCGCAGCAAGCCGCCGGAGCTCGCGCACACACGAGACGCACACCGCTTTTTCACTGAGCGCAAACTACAGAGCATCGACTCGCTCTGAATACAAACACGGACCGTCACTGGGAGCCAAGCTCAAACATATCACATGTATCACGAATACACGTCAGCTGGATGTGAACAACATTGTATCGCAAAATAATCGGTTGTGCGTGAACCAGAATGTATCGTATTCTCATCTGTGTTTTTATGGCGTGCATTGTTCATTTCTGCATGTAAAATAAAggaattgtttttcattttca

Function

symbol description
rnaseh2a Predicted to enable RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer and mismatch repair. Predicted to act upstream of or within RNA metabolic process. Predicted to be part of ribonuclease H2 complex. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2A (ribonuclease H2 subunit A).

NR:

description
PREDICTED: ribonuclease H2 subunit A

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0004523 RNA-DNA hybrid ribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K10743 RNASEH2A; ribonuclease H2 subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234909.1 False 1234 mRNA 0.52 10 25564387 25568911
XM_043234919.1 True 1444 mRNA 0.49 9 25564387 25568583
XM_043234928.1 False 1235 mRNA 0.51 9 25564387 25568291

Neighbor

gene id symbol gene type direction distance location
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 532 25561561 ~ 25563855 (-)
LOC122351449 fbxo48,LOC107747422,LOC107594409,LOC107675512,LOC107583249,LOC107684254 coding downstream 34847 25527479 ~ 25529540 (-)
cnrip1a cnrip1a,LOC107676313,LOC107684253,LOC107594460,LOC107583248,LOC108258529 coding downstream 37945 25523367 ~ 25526442 (-)
ppp3r1b PPP3R1,ppp3r1,ppp3r1a,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 42017 25509574 ~ 25522370 (-)
spred2a spred2a,LOC107747416,LOC107675542,LOC107757033,LOC107583232 coding downstream 97921 25453204 ~ 25466466 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding upstream 8311 25577222 ~ 25578799 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding upstream 118886 25687797 ~ 25701284 (-)
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding upstream 137913 25706824 ~ 25713974 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding upstream 147247 25716158 ~ 25727538 (-)
aptx aptx,LOC107757069,LOC107746089 coding upstream 240968 25809879 ~ 25813849 (-)
G6165 NA non-coding downstream 59533 25503940 ~ 25504854 (-)
G6118 NA non-coding downstream 136451 25283375 ~ 25427936 (-)
G6132 NA non-coding downstream 177811 25386177 ~ 25386576 (-)
G6125 NA non-coding downstream 247699 25314516 ~ 25316688 (-)
G6104 NA non-coding downstream 306080 25253397 ~ 25258307 (-)
G6200 NA non-coding upstream 51335 25620246 ~ 25620504 (-)
G6201 NA non-coding upstream 52523 25621434 ~ 25621745 (-)
G6223 NA non-coding upstream 167886 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 199996 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 267027 25835938 ~ 25844994 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 7405 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 162032 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 164370 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 256416 25304597 ~ 25307971 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 430228 25132003 ~ 25134159 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 145191 25714102 ~ 25715704 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 262413 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 561877 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 847948 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 885339 26454250 ~ 26523402 (-)

Expression


Co-expression Network