snrpb2 (snrpb2,LOC107684252,LOC107676294)


Basic Information

Item Value
gene id snrpb2
gene name snrpb2,LOC107684252,LOC107676294
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25561561 ~ 25563855 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234942.1
GGTGGCGCAACTAACGCGACTGTTTCACAACAAGAAACCACCGGAGGAAGAAACGAAGCGGCGGTTTCCGCTTAAACTCAGAAGTGTGTGTGGGTTTACCTCAAGTTATTAATCATGGACATACGACCGAATCACACCATCTATATCAACAACGTGAACGATAAGATCAAGAAGGAAGaGCTGAAGAGGTCCCTGTACGCCTTATTCTCCCAGTTCGGCCAGATCCTGGACATTGTCGCGCTGAAGACCACAAAGATGAGGGGTCAGGCGTTTGTTATCTTCAAAGAGCTTTCTGCGGCCACCAATGCCCTCAGACAGCTCCAGGGATTTCCTTTCTACAATAAACCCATGCGAATCCAGTATGCGAAAACGGACTCGGACCTGATCTCAAAGATGAGAGGCACGTATGGAgataaagaaaagaagaaagagaagaaaaagaaagctctGGAACAGGCTGCCAGTGTCAACAAGAAACCAGCGGGAGCTATAAACACACAACCTCCTCCGCCTGCCACAGTCCAGGTCCCTGACAACCCACCAAACTATATTCTGTTCCTGAATAATCTCCCAGAAGAAACCAATGAGATGATGCTCTCCATGTTATTCAACCAGTTTCCAGGGTTTAAAGAAGTGCGCCTGGTCCCTGGAAAGCATGACATTGCGTTTGTGGAGTTTGAGAGCGAGGCTCAAGCCGGGGTTGCGAAGGACGCGCTGCAGGGGTTCAGAATCACAGCCACGTGTGCCATGAAAATCACGTATGCCAAAAAGTGACCCGGCTCGCGCTTACTGGACTGTAACTGAGGCTTTTCAGCGGACCCTCGCTtctgatttgtgtttttggcttaacactcaaacacactttcttctttttttttttttttttttaacttgtttgttCAGTGACTGTCGCTTAGTGTCGTTGTGTTTTTGTACAGGAATTGTTTGGTCACTGAAGACCTCGTGATATTCCAGGACAGACGTTTATTTTGTACTGTGGATTAATAAAATTAGCAACTAAA

Function

symbol description
snrpb2 Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPB2 (small nuclear ribonucleoprotein polypeptide B2).

NR:

description
U2 small nuclear ribonucleoprotein B''

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11094 SNRPB2; U2 small nuclear ribonucleoprotein B''

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234942.1 True 1022 mRNA 0.46 7 25561561 25563855

Neighbor

gene id symbol gene type direction distance location
LOC122351449 fbxo48,LOC107747422,LOC107594409,LOC107675512,LOC107583249,LOC107684254 coding downstream 32021 25527479 ~ 25529540 (-)
cnrip1a cnrip1a,LOC107676313,LOC107684253,LOC107594460,LOC107583248,LOC108258529 coding downstream 35119 25523367 ~ 25526442 (-)
ppp3r1b PPP3R1,ppp3r1,ppp3r1a,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 39191 25509574 ~ 25522370 (-)
spred2a spred2a,LOC107747416,LOC107675542,LOC107757033,LOC107583232 coding downstream 95095 25453204 ~ 25466466 (-)
LOC122329893 kif16b,LOC107594414,LOC107747412 coding downstream 336159 25208777 ~ 25225402 (-)
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding upstream 532 25564387 ~ 25568911 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding upstream 13367 25577222 ~ 25578799 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding upstream 123942 25687797 ~ 25701284 (-)
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding upstream 142969 25706824 ~ 25713974 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding upstream 152303 25716158 ~ 25727538 (-)
G6165 NA non-coding downstream 56707 25503940 ~ 25504854 (-)
G6118 NA non-coding downstream 133625 25283375 ~ 25427936 (-)
G6132 NA non-coding downstream 174985 25386177 ~ 25386576 (-)
G6125 NA non-coding downstream 244873 25314516 ~ 25316688 (-)
G6104 NA non-coding downstream 303254 25253397 ~ 25258307 (-)
G6200 NA non-coding upstream 56391 25620246 ~ 25620504 (-)
G6201 NA non-coding upstream 57579 25621434 ~ 25621745 (-)
G6223 NA non-coding upstream 172942 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 205052 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 272083 25835938 ~ 25844994 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 4579 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 159206 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 161544 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 253590 25304597 ~ 25307971 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 427402 25132003 ~ 25134159 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 150247 25714102 ~ 25715704 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 267469 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 566933 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 853004 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 890395 26454250 ~ 26523402 (-)

Expression


Co-expression Network