znf330 (znf330,LOC107746098)


Basic Information

Item Value
gene id znf330
gene name znf330,LOC107746098
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26077265 ~ 26083184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235457.1
GTATCTGGCAACCGCTCCGTCACGGAGGGCGCAGAACATGTGAGTTGCCCTCATCTGTGATGGAGCGGGACTACATCTGCTGTAATTCTTTTCAGTTAACATATAAATGGGATTTAAACACATATAGACGTTTTAATACAGTTTATCTACATTAGGTTATAATCCAAACAGTGCCGCCACGCATAAAACACCTGTTAGTAAATGCTCATGGAACCGATCACAGCTGCAATTAGGCTTCCTTCCGGAACGATTTATTGTTACACACGCACCGGGATCAGCTGTGACCAACTGCCTGTTTTCTACGCTATTAAACCTTTAATCTAGGTGGAAGATGCCTAAGAAAAAGACTGGAGCTCGGAAGAAGGCTGAGAACCGAAAGGAGCGAGAGAAACAGATTCGGGCCAATAGAGAGACTGTGGATGTGGCCAAGCACCCGTGCAATGCATCCATGgAATGTGATAAGTGTCAAAGgcGACAAAAGAGCAGGGCGTTCTGCTATTTCTGTGCTTCAGTGCAGAAACTTCCCATGTGTGCACAGTGCGgCAAAACCAAATGTATGAAGGCTTCAGACTGTGTCATAAAACATCCTGGCGTCCACAGCACCGGAATGGGCATGGTGGGGGCCATATGCGACTTCTGCGAGGCCTGGGTGTGCCATGGAAGGAAGTGCCTGAGCACCCACGCCTGCTCCTGCCCTCTTTGTGACGCAGACTGCATCGAGTGTGACCGCAGCGTTTGGGAACACGCTGTAGCACTGTGCTCTGGTGTGACGTGGTTCAAATCCTGTTTGCTGTGTGACGTACAGGTGGCCGCATTTTCCGCTGCTCCTTTTGCCACAACTTCCTGTGTGAGGACGATCAGTTCGAACACCAGGCGAGCTGTCAGATCCTGGAAGCGGAGACTTTTAAATGCTTGTCTTGCAATCGTCTCGGCCAGCATTCTTGTCTCCGCTGCAAGGCGTGTTTCTGCGACGATCACGCCCGAAGCAAAGTGTTCAAGCAGGAGAAAGGCAAGGCTCCTCCGTGCCCGAAGTGTGGACACGAAACGCAGGAGACCAAAGATCTCAGCATGTCCACACGAACACACAAATTTGGCCGTCAGAGTGGCGCCGATGAAGACGAATACGGTGCGTCCGGATACAGTTCCTACTGGAAGAATCTGGAATCCGGAGGGAGCTACAAAGAGGAGGACGTCGAGGAGGACGACGACTTTGATGACGATTacgatgaagaggaggaggaggatgacgACGAAGACGAAGACGAGGAGGAAGACGACGAACCAGAGGTGGAAGAATCTCTCTCAAATCTGAGTTTGGGAGCAAGTGGAAAGccccagtaaaaaaaaaaaaacaaaaaacacaacttgtaGAGCTAAAACCATGTCAGATATTTGGCCTTTGACTTAAGCTTTTCTGTACTGTGTTGATACGGACGTGATTGTCAGCACCCTGAATTTCAAATacatctgaaatgtttttaaaagcca
>XM_043235465.1
GGGCGCAGAACATGTGAGTTGCCCTCATCTGTGATGGAGCGGGACTACATCTGCTGTAATTCTTTTCAGTTAACATATAAATGGGATTTAAACACATATAGACGTTTTAATACAGTTTATCTACATTAGGTTATAATCCAAACAGTGCCGCCACGCATAAAACACCTGTTAGTAAATGCTCATGGAACCGATCACAGCTGCAATTAGGCTTCCTTCCGGAACGATTTATTGTTACACACGCACCGGGATCAGCTGTGACCAACTGCCTGTTTTCTACGCTATTAAACCTTTAATCTAGGTGGAAGATGCCTAAGAAAAAGACTGGAGCTCGGAAGAAGGCTGAGAACCGAAAGGAGCGAGAGAAACAGATTCGGGCCAATAGAGAGACTGTGGATGTGGCCAAGCACCCGTGCAATGCATCCATGgAATGTGATAAGTGTCAAAGgcGACAAAAGAGCAGGGCGTTCTGCTATTTCTGTGCTTCAGTGCAGAAACTTCCCATGTGTGCACAGTGCGgCAAAACCAAATGTATGAAGGCTTCAGACTGTGTCATAAAACATCCTGGCGTCCACAGCACCGGAATGGGCATGGTGGGGGCCATATGCGACTTCTGCGAGGCCTGGGTGTGCCATGGAAGGAAGTGCCTGAGCACCCACGCCTGCTCCTGCCCTCTTTGTGACGCAGACTGCATCGAGTGTGACCGCAGCGTTTGGGAACACGGTGGCCGCATTTTCCGCTGCTCCTTTTGCCACAACTTCCTGTGTGAGGACGATCAGTTCGAACACCAGGCGAGCTGTCAGATCCTGGAAGCGGAGACTTTTAAATGCTTGTCTTGCAATCGTCTCGGCCAGCATTCTTGTCTCCGCTGCAAGGCGTGTTTCTGCGACGATCACGCCCGAAGCAAAGTGTTCAAGCAGGAGAAAGGCAAGGCTCCTCCGTGCCCGAAGTGTGGACACGAAACGCAGGAGACCAAAGATCTCAGCATGTCCACACGAACACACAAATTTGGCCGTCAGAGTGGCGCCGATGAAGACGAATACGGTGCGTCCGGATACAGTTCCTACTGGAAGAATCTGGAATCCGGAGGGAGCTACAAAGAGGAGGACGTCGAGGAGGACGACGACTTTGATGACGATTacgatgaagaggaggaggaggatgacgACGAAGACGAAGACGAGGAGGAAGACGACGAACCAGAGGTGGAAGAATCTCTCTCAAATCTGAGTTTGGGAGCAAGTGGAAAGccccagtaaaaaaaaaaaaacaaaaaacacaacttgtaGAGCTAAAACCATGTCAGATATTTGGCCTTTGACTTAAGCTTTTCTGTACTGTGTTGATACGGACGTGATTGTCAGCACCCTGAATTTCAAATacatctgaaatgtttttaaaagcca

Function

symbol description
znf330 Predicted to enable zinc ion binding activity. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human ZNF330 (zinc finger protein 330).

NR:

description
PREDICTED: zinc finger protein 330

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235457.1 True 1488 mRNA 0.49 10 26077265 26083184
XM_043235465.1 False 1403 mRNA 0.49 10 26077265 26083158

Neighbor

gene id symbol gene type direction distance location
il15 LOC107730128 coding downstream 403 26069176 ~ 26076862 (-)
aptx aptx,LOC107757069,LOC107746089 coding downstream 263416 25809879 ~ 25813849 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding downstream 349727 25716158 ~ 25727538 (-)
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding downstream 363291 25706824 ~ 25713974 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding downstream 375981 25687797 ~ 25701284 (-)
elmod2 elmod2 coding upstream 52522 26135706 ~ 26141269 (-)
zgc:66455 NA coding upstream 58600 26141784 ~ 26147822 (-)
b3gnt2a LOC107703838,LOC107746084,LOC107729991,LOC107576349,LOC107598544 coding upstream 64748 26147932 ~ 26155748 (-)
commd1 commd1,LOC107703732,LOC107598557,LOC107594359,LOC107700824 coding upstream 73746 26156930 ~ 26163732 (-)
usp34 usp34,LOC107729952,LOC107746122 coding upstream 107735 26190919 ~ 26235100 (-)
G6687 NA non-coding downstream 11079 26064559 ~ 26066186 (-)
G6652 NA non-coding downstream 138414 25938421 ~ 25938851 (-)
G6650 NA non-coding downstream 158480 25918570 ~ 25918785 (-)
G6636 NA non-coding downstream 230735 25838851 ~ 25846530 (-)
G6634 NA non-coding downstream 232271 25835938 ~ 25844994 (-)
G6670 NA non-coding upstream 8825 26092009 ~ 26096257 (-)
G6596 NA non-coding upstream 105874 26189058 ~ 26190510 (-)
G6741 NA non-coding upstream 280488 26363672 ~ 26367603 (-)
G6747 LOC103457336,LOC103359577 non-coding upstream 285766 26368950 ~ 26369519 (-)
G6749 LOC107729639,LOC107598502,LOC107700871,LOC107736507,LOC107703825,LOC107594284 non-coding upstream 290478 26373662 ~ 26374623 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 213478 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 361561 25714102 ~ 25715704 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 520283 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 674910 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 677248 25398491 ~ 25400017 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 47604 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 333675 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 371066 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 718726 26801910 ~ 26802954 (-)
si:ch211-286b5.5 NA other upstream 834485 26917669 ~ 26920034 (-)

Expression


Co-expression Network