scpp9 (LOC107674192)


Basic Information

Item Value
gene id scpp9
gene name LOC107674192
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20581052 ~ 20582782 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235477.1
ATGAAGAACTTTGTCATAATCTTTATGGTTCTGAGCGTAATTGCTGAGATCACCATAGCTAAGAAACTGCGTCTGATCAACGGTCTGAATGGTGGTCTGGTTACTGGTGTAAATGGAGTTAATCCTCTACTGGTGGGTGGTCTAAACCCTCCTGTGCTTTCCGGTGGTCCTGCTGTTATTGGACAGCCTCCGTTAGCACAGATTCTGCCCGCCGCAGCTCTTCCTCCATATGTGCTTCAGCAGCCACCCGTGGTTCCTTTCGTTCCCCCCAACATCGGACCTCAGTTTGCTTACCCTTTCGCTTCACCTAATGGGGCGTTGCCGTATTACATTGCTGGACCCCAGAATCAACCAGCCATAATGCCTCCTCAGCAACAAATTGCGGCTGGACAAGGCCCTACTGGAAATAATCAAGCTGTACCACCACTCAATAGATTTAAGCGCTCCTTTCTCAGAAGGACCACTGCAAGAGCCCCTGTCTCTATCACCCAGATGCCAGCTCAAGTCAACCCTACCGTGTCTGGAAACCCTGTTGGGTAA

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235477.1 True 540 mRNA 0.50 8 20581052 20582782

Neighbor

gene id symbol gene type direction distance location
si:dkey-22i16.9 NA coding upstream 678 20576845 ~ 20580374 (+)
zgc:66472 LOC107730520,LOC107664577,LOC107551622 coding upstream 104770 20470299 ~ 20476282 (+)
si:ch73-109d9.1 LOC107556808,LOC107746687,LOC107551630,LOC107664569,LOC107730521,LOC107674214 coding upstream 110891 20461119 ~ 20470161 (+)
si:ch73-109d9.3 LOC107730528,LOC107551616,LOC107664580,LOC107674213,LOC107746741,LOC107556809 coding upstream 121980 20455020 ~ 20459072 (+)
si:ch73-109d9.2 LOC107674212,LOC107746722,LOC107556810,LOC107730527,LOC107664578 coding upstream 126173 20451158 ~ 20454879 (+)
odam LOC107674208,LOC107556797,LOC107746942,LOC107552703,LOC107664548 coding downstream 3242 20586024 ~ 20587825 (+)
ambn NA coding downstream 11024 20593806 ~ 20603242 (+)
scpp7 scpp7,LOC107551652,LOC107556796,LOC107664542,LOC107674205 coding downstream 21458 20604240 ~ 20605941 (+)
scpp5 scpp5,LOC107552310 coding downstream 23610 20606392 ~ 20609673 (+)
enam si:dkey-22i16.3,LOC107664558,LOC107730507,LOC107551644,LOC107674207,LOC107746966,LOC107556794 coding downstream 28641 20611423 ~ 20613861 (+)
G4853 NA non-coding upstream 120484 20460337 ~ 20460568 (+)
G4852 NA non-coding upstream 120869 20459499 ~ 20460183 (+)
LOC122345303 NA non-coding upstream 176794 20401851 ~ 20404258 (+)
G4829 NA non-coding upstream 201720 20377325 ~ 20379332 (+)
G4823 NA non-coding upstream 214469 20365859 ~ 20366583 (+)
G4976 NA non-coding downstream 137497 20720279 ~ 20721036 (+)
G4984 ctnna2 non-coding downstream 345515 20928297 ~ 20930642 (+)
G4991 NA non-coding downstream 434438 21017220 ~ 21020726 (+)
G4996 NA non-coding downstream 494257 21077039 ~ 21077896 (+)
G5028 smox,LOC107719767,LOC107689473,LOC107551688,LOC107692173,LOC107551695,LOC107567053 non-coding downstream 985320 21568102 ~ 21571149 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 337703 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 435196 20142461 ~ 20145856 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 804002 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 1058653 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 2296408 18247250 ~ 18284644 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 738680 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1008095 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1049433 21632215 ~ 21635052 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 2257906 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 2960282 23543064 ~ 23554625 (+)

Expression


Co-expression Network