LOC122341978


Basic Information

Item Value
gene id LOC122341978
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1043183 ~ 1047811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235725.1
ATTGGAGTTCGGAACGTTTAAGGTTGAAGTCCATTGAGAGCGTTTTAGCAGGTCCTTCCCATTCTCTCCCAAAATCACAGTTCTGCCTTTGTTAAATGAAAGGGCTTCCATAGAAAGGATCCATAATACTGTCGCTCACCGCGAGCGTCATCTGTCCTGCGGTTTACATGCAACATGTCTTCGTCTACGGCACGCTGAAGAAAGGCCAGCCCAACCACGTCGAGATGCTGGATCCTGCCAACGGTCGGGCTGAGTTCCTCGCTCGCGCTCGCACCGTAGAGCCGTACCCCCTCGTGATCGCCACCGATGAAAACGTCCCCTTCCTGCTCGACGCTCCCGGGACGGGCCGGCGCGTCTGCGGAGAGATCTACCGCGTGGACCAGAAGATGCTGGAGTTCCTGGACGAGTTTGAAGACTGTCCAAAGACGTACCAGCGCACCGAGATCCGGCTGGAGGTGCGGGACAGGGACCGGGAAGGAGACAACATCCAGGAGGCGTTCGTGTACAGCACGATTACGTATGAACCCGAGTGGCTCCAGAAACCAACATATGAGAGTTATGATGCAAACGGGGATCATGGACTGAAATATATAGACAGAGACACGAGCAGCGTAACACAACAAAATACTGGTGCTGTGAAGACTGGATGTGACGCCACTAATCACTGACTGTCAGTCGATGGTTATTATATTTACAACACACAAAAATCATTTGCAATGATTGCGTCCAGTGTAGATAGCCTCAAGCTGttgcttatattttatataaaatttatgtataaaatgtaatacagtatacagtataagatacagtgtatatatatatttgtagacAAAGTGAGTTGTCctg
>XM_043235735.1
CTGAGTAGTGACTACACCAAGAGTCAAGCCTAAAAGGAACCGTAGCATAGCATCGGAAAACAGGATCCAAAATCAACACTTGCTGATCAATTAAtcacagaaagaaaaatcatCAGACGCTGGAGTCATGTCGTAGCATCTCACCGCGAGCGTCATCTGTCCTGCGGTTTACATGCAACATGTCTTCGTCTACGGCACGCTGAAGAAAGGCCAGCCCAACCACGTCGAGATGCTGGATCCTGCCAACGGTCGGGCTGAGTTCCTCGCTCGCGCTCGCACCGTAGAGCCGTACCCCCTCGTGATCGCCACCGATGAAAACGTCCCCTTCCTGCTCGACGCTCCCGGGACGGGCCGGCGCGTCTGCGGAGAGATCTACCGCGTGGACCAGAAGATGCTGGAGTTCCTGGACGAGTTTGAAGACTGTCCAAAGACGTACCAGCGCACCGAGATCCGGCTGGAGGTGCGGGACAGGGACCGGGAAGGAGACAACATCCAGGAGGCGTTCGTGTACAGCACGATTACGTATGAACCCGAGTGGCTCCAGAAACCAACATATGAGAGTTATGATGCAAACGGGGATCATGGACTGAAATATATAGACAGAGACACGAGCAGCGTAACACAACAAAATACTGGTGCTGTGAAGACTGGATGTGACGCCACTAATCACTGACTGTCAGTCGATGGTTATTATATTTACAACACACAAAAATCATTTGCAATGATTGCGTCCAGTGTAGATAGCCTCAAGCTGttgcttatattttatataaaatttatgtataaaatgtaatacagtatacagtataagatacagtgtatatatatatttgtagacAAAGTGAGTTGTCctg

Function

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0003839 gamma-glutamylcyclotransferase activity molecular_function

KEGG:

id description
K19761 GGACT; gamma-glutamylaminecyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235725.1 False 849 mRNA 0.49 2 1043183 1047811
XM_043235735.1 True 854 mRNA 0.49 2 1045027 1047811

Neighbor

gene id symbol gene type direction distance location
LOC122342042 LOC107746594,LOC107582328,LOC107686751 coding upstream 304261 729071 ~ 738922 (+)
LOC122337612 cd38,LOC107568972,LOC107693813 coding upstream 450842 567855 ~ 592341 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding downstream 197352 1245163 ~ 1250334 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding downstream 198882 1246693 ~ 1261968 (+)
LOC122351641 NA coding downstream 280574 1328385 ~ 1331549 (+)
LOC122350806 NA coding downstream 287113 1334924 ~ 1346793 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 408275 1456086 ~ 1465285 (+)
G128 NA non-coding upstream 132486 910489 ~ 910697 (+)
G121 urp2,LOC107698908,LOC107555268,LOC107568775,LOC107718017,LOC107709382,LOC107653671 non-coding upstream 153127 888664 ~ 890056 (+)
G120 NA non-coding upstream 154820 885518 ~ 888363 (+)
G84 NA non-coding upstream 420445 616164 ~ 622738 (+)
LOC122348571 NA non-coding upstream 568023 474039 ~ 475160 (+)
G141 NA non-coding downstream 2951 1050762 ~ 1083379 (+)
G162 kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240 non-coding downstream 78655 1126466 ~ 1128090 (+)
G138 NA non-coding downstream 78955 1126766 ~ 1212143 (+)
G139 rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592 non-coding downstream 100575 1148386 ~ 1151169 (+)
G175 NA non-coding downstream 170254 1218065 ~ 1218734 (+)
LOC122341994 NA other upstream 593543 445940 ~ 449640 (+)
G10 NA other upstream 864983 177716 ~ 178200 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other downstream 71908 1119719 ~ 1120721 (+)
LOC122327253 NA other downstream 391229 1439040 ~ 1441666 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 1138010 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1435829 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1445761 2493572 ~ 2558527 (+)

Expression


Co-expression Network