LOC122342255 (LOC107748337,LOC107665801,LOC107573435,LOC107694467)


Basic Information

Item Value
gene id LOC122342255
gene name LOC107748337,LOC107665801,LOC107573435,LOC107694467
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2406814 ~ 2419671 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236061.1
ATGCAGCAGCCCCCGAGCGCGCCGCCGACGGACGCGGACCCCGCGGACGTGTTCCTGAAGCGCCGGCGGACGGCTCTCTGGTGCTCCGTGTCTCTGTTCGCTCTCTCTGTTCTGGTTCTGGTGGTCGGGCTGCTGGCGGCCACGCAGACGGATAACGTGGCCGTGTCTGGATACTATCCCGGGATTATACTGAGCTTTGGAGCGTTCCTGGGAATCGTCGGTCTGAACCTGGTGGAGAATCGCAGGCCGATGctggTGGCCTCCATCATCTTCATCAGTCTGGGTGTGGTGTCGTGTTTTCTCTGCTCCATCATCGACGGCATCATCGCGGCTGAGTTCATCgaTAGGAGGCCGCTGATGGAGGGCCGCTGTGAGTTTTACTCCAGCTCTTCTTACAGCTATGACACTTACTACACTGAGGTTCACTGCCGCTCCTACGGAAATCAGTGCAGTCTGAAGGTGAAGAGCAACACCTGCTACTGCTGTGACCTGTTCCACTGTGACAGcgtgGACTACCGCGTGCAGTACTACGAGTTCACGGGTGTGAGCAGCTGCTGGGACGTGGTGAATCTGTACCGTCtgctgtgggtgtgtgtgacGCTCAACGTGCTCGGAGTGTTTCTGGGCATCATCAGCGCTGCGGTGctcggagccttcaaagaccTGTCTCCTACAGCTCGCAGTCACATGACCCCCAGTCCGACTCCAGCCCCTCACATCTTGTACAACCCCACCCAGCACCTGATCACTTACACCGGCTTCTGCCCCTCCGGACAAACTCTACCCGCCTACCCTAACTACCCGCTGCCCATGCAGCATCTGAACGGTTACCCAGCTCCGGCAGCAGGTCAGTCCGTCCCCGAGGTCACGACCTCTCCGTCTGACGAGACTCAGGCGGCGTCTCAGAGCGGCTCGAATCCAGTCGCACCGCCTCAATCCTCGTCTCAGGACAACAGCGGCTACATGCTGACTCCAAACGCTCCCTCGCTCTACGCTCACTCGTTAGGGCCCTTCGAGAAGCCTCCACCTTACGCCTGCTGAAGaacactgacctctgacccctgtgACCCGCGAACCACCTCAGAGAGAGTCTTATGTAATCGTCACTTATTCTTGTAGCAAATGTGGTCGATGTTGTTCTCTAGCTGTGTTTCCAGAACCTCTGAACTTTGGTGGATCTTCATAGTTTGATTCATTGAATCATATAAAGCTGAAACAGACTCATCCTCAGCTTCAGCTCACAGATCTCTGTCCTCTTCAGTCTTCTGCGGTCAGATCTAATACTCATCAGGAGCTGGATTCACAAAACAGACGAAATCTCGAAATGTTGAAGTTTTTTGTTGCATCATTGTGAAAAATAACGTTtcgcacatttatttttaggagtGAATGTTCTCATTATAATTGATGTTCTTGGTTATTGTCCTTAAAAATCATTGTGATAACTGTCAGCTTgtcataaatgattaataaatgtgtttgggtattaaaaataacactaacTACACATTCAAAACTGCCAGATTTTACTTTATGGTTAACAGAACTCTTACATTTGTTCCAAAAAGTCATGAGAAATACGTTAAACCGATGCACGCCTGTCAGCTTATgctgaagaaaaatgttttaacccTTTCATGCTCAGGCATTAGaggattttgaacattttaataagtaaCCAGTTTAgattaaaggttttaaaaaaagccacAGAGCACATAACAGAAAGACTCATGAATTTCTTGATTAAACTCTAAATTATTTATctgctatttattatttttctacttATTAATTTGCTCCCTGGTACATTTACTAAATGcttaaaactacaataaacaaACACCCAATGAACCATATTTCCATGCGTTTTCAATGTTTGTGTTGTTCAGCGTCTTCtgtatatttaaagtgtttacTGCACAAGATCGTCATTTTTCActcaataaaattcaaaataatttcattattttgaagtaattttactttcaataaaatcctcaacaaaaatattttcacaatagaAATGGTTCTATTTTTTAACGAGAAACTATAAATGATTAAGGAGTGAGTTCAGAAGGCTTCGGAGAGACGTTTAAAATAAGCAGATTTGACTTCACATACACTTATCTGTGTTCATTTCCAGCATGTTAATCTGGATGaagacacatttaaaaagtcCTGCTTGATTTTATTGCCATATTAAAGTTTTTACAGAGAGGTGTATCGCTTCGGAAATCAGAGAATGCTGTgaacagagagaggaaaactTCAGAATAAAGAGAGGAAAACACGTACAGATTGAAATCTAAATGTATGTTAAAC

Function

NR:

description
PREDICTED: transmembrane protein 255B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236061.1 True 2325 mRNA 0.45 9 2406814 2419671

Neighbor

gene id symbol gene type direction distance location
tpp2 tpp2,si:ch73-244f7.4,LOC107665822,LOC107748328 coding downstream 76800 2310255 ~ 2330014 (-)
blzf1 blzf1 coding downstream 120695 2281935 ~ 2286119 (-)
txnl4b txnl4b coding downstream 130461 2274373 ~ 2276353 (-)
mrpl16 mrpl16 coding downstream 135100 2268262 ~ 2271714 (-)
LOC122351091 cenpq,LOC107748325,LOC107665818 coding downstream 139348 2260717 ~ 2267466 (-)
cenpe LOC107751066,LOC107573438,LOC107577987,LOC107654461 coding upstream 805 2420476 ~ 2440899 (-)
grk1a grk1,grk1a,LOC107751068,LOC107694475,LOC107748333 coding upstream 22373 2442044 ~ 2448598 (-)
tfdp1b tfdp1,LOC107694476,LOC107751069,LOC107748334 coding upstream 30600 2450271 ~ 2458808 (-)
tmco3 tmco3,LOC107577076,LOC107748345,LOC107571984,LOC107577957,LOC103375438 coding upstream 40019 2459690 ~ 2470466 (-)
lamp1a LOC107694471,LOC107751063,LOC107571985,LOC107574978 coding upstream 69798 2489469 ~ 2498691 (-)
G617 NA non-coding downstream 26873 2378431 ~ 2379941 (-)
G563 NA non-coding downstream 35063 2369634 ~ 2371751 (-)
G614 NA non-coding downstream 46482 2349200 ~ 2360332 (-)
LOC122349938 NA non-coding downstream 64525 2334342 ~ 2342289 (-)
G559 ercc5 non-coding downstream 113297 2292924 ~ 2293517 (-)
G640 NA non-coding upstream 54651 2474322 ~ 2510689 (-)
G647 NA non-coding upstream 95983 2515654 ~ 2516175 (-)
LOC122351916 NA non-coding upstream 129253 2548924 ~ 2552261 (-)
G638 NA non-coding upstream 136572 2556243 ~ 2558864 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding upstream 141684 2561355 ~ 2561966 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 801830 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1175167 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1658450 738137 ~ 748364 (-)
G67 NA other downstream 1970689 435808 ~ 436125 (-)
G20 NA other downstream 2219729 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 269094 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 716837 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1588169 4007840 ~ 4014287 (-)
G820 NA other upstream 1878639 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2536448 4956119 ~ 4960210 (-)

Expression


Co-expression Network