plrg1 (plrg1,LOC107757621,LOC107695461,LOC107700313)


Basic Information

Item Value
gene id plrg1
gene name plrg1,LOC107757621,LOC107695461,LOC107700313
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14583650 ~ 14588764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236070.1
CGCTCTACCGGAAGACGCTTTGTCGCGCCCGGAAGTCTTATGTTTTTCACGTCCGGTTCAGATTGTAATTGTTTGGCGTGTTGAAGCTTTAACGTCTGATGAAGATTTAAAAGTTTGCCTGCCGTGCTCGCGTTTTAAGAAAACAGCAAACATGACTGAGGAAGTGCAGAAGCACTCTGTCCACACGCTTGTGTTTCGTTCTTTGAAAAGAACTCACGACATGTTTGTGTCAGATCACGCAAAACAAGTAGCTCTGGACGAGCAGAGCTACAAGATGAAAATGACCGTGAAGATGAGAGCAGAATACAAACCTGTGTTGCACATGCCTGTGTTGAAAGAGGGCAGAGACAGAGGGCCACTCCATGCCTCTGACCCATATGGCCAGCCGGGATACCCACTGCCTGACTCTGGCCCAGATTACTTGGTGACGGGAACCCATCCGTATCCATCAGCTCCTGGAGTGGCCCTCACTGCAGATACACAGATACAGAAGATGCCCAGTGAAGCAGGTGTTCACTCCATGGCTCTGGCCCTTCCTCCCTCTCAAGCAAGGCAGGAAGCCAGTCGGACTGCAGCCAGCGTGGCAGATATCCACAGACATGCAGGAGGTGCAGAGAGATCTCAGCCCCCACAACACGCACTGTCTCTCTTGGAAGGAGGTACTAAAACTTCTGCACTGATACCAAGAAAGGCTCCTACCATGCCCAAACCTCAGTGGCATCCTCCATGGAAACTGTACAGAGTCATTAGTGGCCATCTGGGCTGGGTCAGGTCTATAGCAGTGGAGCCTGGAAACCAGTGGTTTGTGACTGGATCGGCAGACAGAACTATAAAGATCTGGGATCTTGCGAGTGGTAAGCTGAAGCTGTCTCTGACGGGTCACATCAGCACGGTGAGAGGGGTGGCTGTCAGCACACGCAGCCCTTACCTCTTCTCCTGCGGGGAGGACAAGCAGGTTAAATGCTGGGATCTAGAGTATAACAAGGTTATTCGGCACTATCACGGTCACCTGAGTGCAGTGTATGACCTTGACCTCCATCCTACCATTGACGTACTGGTGACCTGTAGTCGAGATGCCACAGCCAGAgtTTGGGACATCAGGACCAAGGCAAATGTCCACACTCTTTCTGGACACACCAACACAGTGGCCACTGTCAAATGTCAAAGTGCTGAGCCGCAGGTGATTACAGgAAGTCATGACACCACCATAAGACTCTGGGATCTGGTTGCCGGCAAAACAAGAGCTACACTGACAAACCACAAGAAGTCTGTCAGAGCATTAATTCTCCATCCCAGACAGTACACCTTTGCCTCTGGTTCTCCTGACAACATTAAGCAGTGGAAATGTCCTGATGGGAACTTCATTCAAAATCTTTCAGGACACAATGCCATTATCAACACACTGGCTGTCAATTCAGATGGAGTTCTAGTGTCAGGAGCTGATAATGGCACTATTCACATGTGGGACTGGAGGACTGGCTACAACTTCCAGAGGATTCATGCAGCAGTGCAGCCTGGGTCTCTGGACAGCGAGTCTGGGATCTTTGCGTGCGTGTTTGATCAGTCTGAAAGCCGACTCATAACAGCAGAGGCTGACAAAACCATTAAGGTCTACAAAGAGGACGACACGGCTactGAAGAATCCCACCCTGTTAATTGGAAACCTGAGATTTTGAAgagaaaaagattttaatttgtgtaCGTTTCTGTATTTGAAAAATACTTTGCTACAATTTAGCCTGCTGATTTCTAACAGCATCTGCTTAAggcataaatgtaaacattgcaTTCAACTCCAGAGAAGTCAAGAGACCTAAGATCAGATGACACGCAGCTcacttatttacaaaaaaaataaactttttatacatttgctgTA

Function

symbol description
plrg1 Acts upstream of or within negative regulation of DNA damage response, signal transduction by p53 class mediator and negative regulation of apoptotic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex; Prp19 complex; and catalytic step 2 spliceosome. Orthologous to human PLRG1 (pleiotropic regulator 1).

NR:

description
PREDICTED: pleiotropic regulator 1

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator biological_process

KEGG:

id description
K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236070.1 True 1879 mRNA 0.48 15 14583650 14588764

Neighbor

gene id symbol gene type direction distance location
LOC122346953 pcdh8 coding upstream 85336 14490784 ~ 14498314 (+)
tmem131l LOC107695518,LOC107745862,LOC107757619,LOC107700308 coding upstream 124632 14425254 ~ 14459018 (+)
mnd1 mnd1,LOC107700309 coding upstream 159505 14413027 ~ 14424145 (+)
LOC122350619 dctpp1,LOC107695562 coding upstream 740259 13842778 ~ 13843391 (+)
fhip1aa fam160a1,fam160a1a,LOC107745858,LOC107695572,LOC107700307,LOC107757618,LOC107598295 coding upstream 756268 13809693 ~ 13827382 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding downstream 16688 14605452 ~ 14607397 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding downstream 46456 14635220 ~ 14643239 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding downstream 55249 14644013 ~ 14659537 (+)
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding downstream 72894 14661658 ~ 14663101 (+)
mxd4 mxd4,LOC107695376,LOC107714650,LOC107757594,LOC107700283 coding downstream 243939 14832703 ~ 14843409 (+)
G3324 NA non-coding upstream 51444 14531016 ~ 14532206 (+)
G3322 arfip1,LOC107695488,LOC107745866,LOC107700312 non-coding upstream 55179 14526617 ~ 14528471 (+)
G3282 NA non-coding upstream 101844 14481430 ~ 14481806 (+)
G3262 NA non-coding upstream 177647 14402406 ~ 14406003 (+)
G3245 fbxw7,LOC107757568,LOC107745860 non-coding upstream 309865 14268912 ~ 14273785 (+)
G3361 NA non-coding downstream 26169 14614933 ~ 14615917 (+)
LOC122353352 NA non-coding downstream 31895 14620659 ~ 14624093 (+)
G3370 NA non-coding downstream 83550 14672314 ~ 14678944 (+)
G3374 NA non-coding downstream 92695 14681459 ~ 14774677 (+)
G3384 NA non-coding downstream 127236 14716000 ~ 14782839 (+)
LOC122345399 NA other upstream 102304 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 465217 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 997669 13516208 ~ 13585981 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 1377934 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 1859192 12659262 ~ 12724458 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 13548 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 21480 14610244 ~ 14612677 (+)
G3380 LOC107572695,LOC107695836 other downstream 134781 14723545 ~ 14791788 (+)
hemgn hemgn,trmo other downstream 442180 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 589839 15178603 ~ 15317624 (+)

Expression


Co-expression Network