tacr3l (tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976)


Basic Information

Item Value
gene id tacr3l
gene name tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31561981 ~ 31572621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236111.1
GATATCGCAGTGAGCTTATCATGGCTGGTCCTCAGAGCGGCTCAAACGTAACGCGTAATTTCACAAACCAGTTCGTGCAGCCGCCGTGGCGCGTCGCGATTTGGTCGGTGGCGTACAGCTCCGTGCTGGCGGTCGCCGTGTTCGGAAACCTCATCGTTATTTGGATCATTTTGGCCCATAAACGGATGCGCACGGTAACCAACTATTTCTTGCTCAACCTGGCGTTCTCCGACGCCTCGATGGCCGCGTTCAACACGCTCGTCAACTTCATTTACGCCACGCACGGAGAGTGGTACTTTGGAGAGGTTTACTGCAAGTTCCACAACTTCTTTCCGGTGACCGCCGTGTTTGCCAGCATTTACTCCATGACTGCGATTGCAGTCGACAGGTACATGGCTATAATTCACCCTGAAGCCCGTCTGTCAGCTACCGCTACCAAAGTGGTGATTGTCTGTATTTGGGCTCTGGCGGTGATTCTGGCTTTCCCGCTGTGTTTCTATTCCACCACGAGAACTATGCCTCGCCGAACCGTCTGCTACGTCGCCTGGCCGAGACCTTCTGAGGATTCGTTCATGTATCATATCATAGTAACCGTGCTGGTGTACATGCTGCCCCTAGTGGTCATGGGCATCACCTACACTATCGTCGGAGTCACACTTTGGGGAGGAGAGATTCCTGGAGATTCGTCAGACAATTACGTCGGACAGCTGCGAGCCAAGAGGAAGGTGGTGAAGATGATGATCGTGGTGGTGGTGACCTTTGCCCTCTGCTGGTTGCCCTATCACGTCTACTTCATCGTGACGGGCGTAAACAAGCATCTGAACAAGTGGAAGTCCATCCAGCaggtctatctgtctgtgttgtGGTTGGCCATGAGCTCCACCATGTACAACCCCATCATTTACTGCTGTCTAAATGGCAGATTCAGGGCCGGTTTCAAACGGGCCTTCAGGTGGTGTCCCTTCATCCAGGTGTCCAGCTACGACGAACTTGAGCTCCGTCCCACCCGTCTCCACCCTCGCAACCAGAGCAGCATGTGCACCCTGTCCCGCATCGACACCAGCGTCCACGGCGACGACCCCCGCCGCAGCAGGTCCCTGCGGTGTCAGGCGGAGGTCAGAGACGAGAGCGCGGCGGCGGCCACCAAGCTCTGTCTTCACCGGGAGCCCACGTTCGCGTCCGAGCAGCTCAGCTGAAGGGCTGTGTGCTCCGTTACGGACGGAAAACAACGTGAACGCGTCCTCGGGCGTCCTGTAAATGACACACTGTACATTTCAGAGCGTGCACTGACACTAAACGCACTCAATCCTGCTGCATGATGAAGTAGCACTGCCTCCAAGTGGAGAACTGTGAATGACTAGCGTACTACTCGATGCATGCTGCCTAGCACTGCATACTACcttctttttcaaaacacaacacaacatacGTATTATGCAATGGACATGAGCAGATAGTGTGCTACGCTACAGATTCATCACCTCATCACGTTGCATGATCTATGAAACACAAATGTGTCTTTCAGATGATGCTTAAGGGCGTGCTTGTGATTCGTTCAATTCAGTAGAACTGGACTGTAGAGTATGTCCTGtacatctgtttatttttatgtctgtgCACATGTGCTTTTTGTACTCATTTAACGCGCCGCAGTAACTTTTCGCCGCATAACTTTTACCGCTTTAGCgcttaataaacagaactgcgCGGAAGAACACTGTAGCCGGAACTACTTCTCTCTATGTAAGTCTATGGCGAATCACGCAGCGTTACCTACCCGAACCCGTCTAAATAGGCCCAATATAAACACGTATTAAAGGTGTTGTGCGgtgattcaggacaagccaaaatcacggtttggaaaatggattcacGGTGtacttatatacat

Function

symbol description
tacr3l Enables tachykinin receptor activity. Predicted to be involved in positive regulation of flagellated sperm motility. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in several structures, including adipose tissue; brain; liver; pleuroperitoneal region; and retina. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 11 with or without anosmia. Orthologous to human TACR3 (tachykinin receptor 3).

NR:

description
PREDICTED: neuromedin-K receptor-like

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04224 TACR3; tachykinin receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236111.1 True 1891 mRNA 0.52 7 31561981 31572621

Neighbor

gene id symbol gene type direction distance location
LOC122349710 patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520 coding downstream 168895 31384340 ~ 31393086 (-)
LOC122349700 NA coding downstream 183442 31372496 ~ 31378539 (-)
cldng LOC107748278,LOC107691622,LOC107580989,LOC107552232,LOC107654796 coding downstream 587820 30972789 ~ 30974161 (-)
creb1a creb1a,creb1b,LOC107714305,LOC107757658,LOC107691602,LOC107552236 coding downstream 620255 30936398 ~ 30941726 (-)
cd99 LOC107746638,LOC107654756,LOC107714307,LOC107598750 coding downstream 688616 30862379 ~ 30873365 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding upstream 18516 31591137 ~ 31595295 (-)
glb1 glb1,LOC107746116 coding upstream 23210 31595831 ~ 31602441 (-)
LOC122327810 LOC107747443 coding upstream 61780 31634401 ~ 31661603 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding upstream 155467 31728088 ~ 31734933 (-)
get3 asna1,LOC107569530,LOC107583208 coding upstream 167164 31739785 ~ 31745699 (-)
G8093 NA non-coding downstream 13227 31548195 ~ 31548754 (-)
G8074 NA non-coding downstream 66071 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 81637 31479187 ~ 31480344 (-)
G8063 NA non-coding downstream 83121 31354663 ~ 31478860 (-)
G8086 NA non-coding downstream 91464 31468295 ~ 31470517 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding upstream 7309 31579930 ~ 31580156 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding upstream 8117 31580738 ~ 31589790 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other downstream 7946 31550186 ~ 31554035 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other downstream 24565 31532069 ~ 31537416 (-)
G8009 NA other downstream 604495 30943498 ~ 30957486 (-)
G7868 NA other downstream 931476 30630234 ~ 30630505 (-)
G7816 NA other downstream 1364133 30192201 ~ 30197848 (-)
LOC122349741 NA other upstream 50053 31622674 ~ 31626684 (-)
LOC122349752 NA other upstream 54282 31626903 ~ 31630020 (-)

Expression


Co-expression Network