cldnd1b (cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989)


Basic Information

Item Value
gene id cldnd1b
gene name cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31591137 ~ 31595295 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236147.1
CTGCTCGTGCCCGAGTCCGTGCGGATTTAGTTGTGCACGCGCGTTCGTAATCGTAACCGGAAGTGGAGTCGTCGTCAGCGCGAAGGGTGTGAGCAATACGATGACACATTGTTTGGATCTCAAGCAGGATCACGTTCGCGAAGATAGTATCCAGATCGTCAGATGTCATAAGAGGATGAAAAGAAGTCTCTGTCACCAGAAACCGTACAAATGATATGACCGGTCGCTGCACTCATCTACCTAAGAGTTAATTGTTAGCCGTCTACAGGAAGTCTTTTTGCACTGCATCACCATGGTGGACAACCGATACGCCACGGCGCTGGTCATCGGCTCCGTGCTCAGCCTGCTTGCCACCGTCTATCTTTCGGTCGCCATGGGAACGCAGCACTGGTACCAGTACCACAGTCAGCCGGCAAGCAACGACGCCAACAACGGCTCGGACCTGCAAACCATGCGGCAGGATTTCGAGGGAGAAGACGTGGATGAGAGGAGCTACAGTGTGGCTCTGTTCCGGCTGAACGGCACGCTGGGTCTCTGGTGGCGCTGCGTTTTGGTGCCCAAAGACTCGCACTGGTTTAAAGAGCCTGATCCGATAATGGTGACTAAATGTCAGGCCTTTACTTTGCCACAGCAGTGGGAATCCAAGTACAAATCTCCTGGGAATATTAACAGCGGAGAAGATCTGCTGCGTACATACCTGTGGAAGTGTCAGTTCCTGCTGCCGCTGGTCTCTGTGGGGCTGGTGTTTCTTGCGGCGCTGATCGGAGTGTGTGCCTGTCTTTGCCGCAGTATCACTCCCACGCTGTTCGTAGGGCTGCTGCATCTGCTGGCCGGCCTGTGTTCCGTGGCCACCGTGTGCTGTTTCCTCGCGGGCGTGCGTTTGCTACACGACATATCCGAGCTGCCCGAGGGGATGAACACTGCGCCGGGCTGGTCCTTGTTTTTGGCTTTGGTCTCGTCTCCGCTGCAGATCATGGCCGCCGCGCTCTTCATATGGGCCGCGAGGAGCCACCGCCAACACTACACTCGAATGACCGCCTACAGGGTTGCTTAGGCAATAAAGCACCGGCTATTGGCTGGATTGTCTTGCCAGCCATGTTCGCTTTAGCGGCCGCTTTTACCACTAACCCAGCTAAAATAATGAAGGAAACTGTCAGAACACACCGCTCAAAGTTAGTAGGTTAACTAACGCCGTCCACCTGTAGCACTATCCTGTGAATATATTCATTTCTTGAAGGATCTTCCTACTATATAACTGCCTTTTAACCACTCTGTTAGCATCTGTGCTGTTGAAGATGAGaaaccaaacttttgaacagaaaagCATCTGTAAACACTAAAGAGTAGCTATTCAGGGCTTCGCCGTGTGTTCAGTCACACTTTGCCTGTTGACTAAACTTATTTTGACCTGTTAGGTTTAGTTTCATCTCCTCAGCGCGTTTTAAACAAAGCCtccgtgttttttttattcagcctGTGTTGTAGCTACTCAGTGACGTCTTGAAGCGATTGCATTGTAGCGCTCTGCAATCCCAAGATGCAGTAGGCTTTCGCCTTGGCCGTAAAGACTGAAAGTTTGTGTCCGTCTTAAGCACTAACCACTTGAGCCTTTTGTGTTTTCCCGaacatttgcttatttatttattttttttccccttgtgcTTCGCCTCGGTTATGCTCCGTTTTACCATTTAGTTTCTCTTTGAGAATGTACTACATGCTTTTCACCCGTTTAGTGACCGATTAGAATCGAGTAATAATGTTTCGTGATGGTTCAGTCATTTAAAACCATCTCAGCTGTGGTTTATATGCTTATTTATACTTCATTTAAAAGAGTTAGCTGGTGCACGTTATGTGATTGTTACCATGATGCTGTTTTCGATATATATTCTTTTCTCAGCGTAATGTTATGACAGCTAAAATGCTGGATGTAAAGCCACTCTAAACGTTGTTGAAATGAGTGCATCTTGAGTGACTTAAAAACATCCGGTCACTGCTATCATTCATCACGTATATCATGCACACTTTGACGTAAAAATCTGTAGGCGGCTTGAAGATTTAAATGGCATGAAAACGTACCAGTGGCAAAAATCACACCGTGCACTTCCAGCTTCACTTGATTTTATTGTGCCATGTGGTGTATTGTAATATTTGAGATCACATTCTGTGCGAGTGTGTTTGCTTTTCGTTTCGTCTTTTTATTCCGAGCCCGTTAGAGGCTCAATTTTGTCAAAGCAATCAGGCAAGAGCGACAGCATATGAGCAATACAGTCAAGAGGATACCTCACACTCCACTGTGACATCACCGTGATGTCAGTACTTCAGAcggttttgccttttttatacagttttgtaCACGTTCCTGTCAAGTGAACATTTTGCTGGTCACAATAAATACCTATTCATCCAAAA

Function

symbol description
cldnd1b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CLDND1 (claudin domain containing 1).

NR:

description
PREDICTED: claudin domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236147.1 True 2412 mRNA 0.47 5 31591137 31595295

Neighbor

gene id symbol gene type direction distance location
tacr3l tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976 coding downstream 18516 31561981 ~ 31572621 (-)
LOC122349710 patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520 coding downstream 198051 31384340 ~ 31393086 (-)
LOC122349700 NA coding downstream 212598 31372496 ~ 31378539 (-)
cldng LOC107748278,LOC107691622,LOC107580989,LOC107552232,LOC107654796 coding downstream 616976 30972789 ~ 30974161 (-)
creb1a creb1a,creb1b,LOC107714305,LOC107757658,LOC107691602,LOC107552236 coding downstream 649411 30936398 ~ 30941726 (-)
glb1 glb1,LOC107746116 coding upstream 536 31595831 ~ 31602441 (-)
LOC122327810 LOC107747443 coding upstream 39106 31634401 ~ 31661603 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding upstream 132793 31728088 ~ 31734933 (-)
get3 asna1,LOC107569530,LOC107583208 coding upstream 144490 31739785 ~ 31745699 (-)
rnf11a rnf11a,LOC107757048,LOC107694828,LOC107583209,LOC107747427,LOC103044796,LOC108441179 coding upstream 150667 31745962 ~ 31750050 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding downstream 1347 31580738 ~ 31589790 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding downstream 10981 31579930 ~ 31580156 (-)
G8093 NA non-coding downstream 42383 31548195 ~ 31548754 (-)
G8074 NA non-coding downstream 95227 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 110793 31479187 ~ 31480344 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other downstream 37102 31550186 ~ 31554035 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other downstream 53721 31532069 ~ 31537416 (-)
G8009 NA other downstream 633651 30943498 ~ 30957486 (-)
G7868 NA other downstream 960632 30630234 ~ 30630505 (-)
G7816 NA other downstream 1393289 30192201 ~ 30197848 (-)
LOC122349741 NA other upstream 27379 31622674 ~ 31626684 (-)
LOC122349752 NA other upstream 31608 31626903 ~ 31630020 (-)

Expression


Co-expression Network