pknox1.2 (pknox1.2,LOC107560978,LOC107676856,LOC107603046,LOC107692119,LOC107718250,LOC107746279,LOC103022264)


Basic Information

Item Value
gene id pknox1.2
gene name pknox1.2,LOC107560978,LOC107676856,LOC107603046,LOC107692119,LOC107718250,LOC107746279,LOC103022264
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22851708 ~ 22860712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236500.1
aaaGTTGCCTGCGTGCCGTTACGCTGTGACGACATGGAAGAGCAGCGGGTCCCGATTGCTGCAGCCGCTTGTCATTGTGACGAAGATTGGCACTAAGTTTGGTGGAGCTGAAGATCAGCTTTATAGAATGCCCAAGCGTTGTCCACAGCAACAGTAACTATGATGACATCCCCATCGGTGTCCATGGAGGATTACCAAGAGGCTGAGCAGATGCAAGTGGGAGAGCAGACGGCGGGACAAGTGGAGGAGAGgttggaggaagaggaggaggaggagagagaggaagaggagagcgGCTCGGCTCCGTCCGAGCCACAAACTCCCATGGAGGTCTACAAGACGGCCATTTACAGACACCCCTTGTTCCCTCTGCTGGCGCTGCTCTTCGAGAAATGCGAGCAATCCACTCAGAGCTCGGAGTGCGTGACCTCGGCCAGCTTCGATGTGGATATCGAGAACTTCGTGCGGAACCAGGAGAAAGAAGGCAAGGCTTTCTTCAGCGAGGACCCCGATTTGGACAATCTGATGGTGAAGGCCATCCAGGTGTTACGGATTCACCTGCTAGAGCTGGAGAAGGTCAATGACCTGTGTAAAGATTTCTGCAGCCGCTACATCGCCTGCCTCAAGACCAAGATGAACAGCGAGACGCTGCTCAGCGGAGAGCCAGGAAGCCCCTACTCCCCGACACAGACACAGATGTTCTCCTCACAGCCGCCGAGCTCCTTCTCTGGAGCCATGAGTCCCCAAGGTATCGTAGTGCCAGCGTCCGCTTTACAGCAAGGCAACGTTACCGTCACAGCTGTAAACCCCACACAGGTGGTAACAGGTGGTACGGTGTATCAGCCTGTTACAGTCGTCACTCCACAGGGGCAGGTGGTCACACAGACGCTGTCGCCCGGAACGATACGCATCCAGAACTCACAGCTTCAGCTGCAGCTGAACCAGGATCTAAACTTTTTCAGTCAGGAGGACAATTCATCTAAGGCCAAGAGAGGCATCCTGCCCAAACACGCCACCAATGTCATGCGTTCTTGGCTCTTCCAGCACATCGGTCACCCTTACCCTACAGAAGACGAGAAGAAACAGATCGCCCTGCAGACCAACCTCACCCTGCTGCAGGTCAACAACTGGTTTATTAACGCACGCCGGCGGATCCTTCAGCCCATGCTGGACGCCAGCTCCTCGGACACACCCAAGAGCAAGAAGAAGACGCCCCAAACACGACCTCTGCAGCGCTTCTGGCCCAACTCCCTCGCCTCCTCTGTGTCCCAGCAACAGGTCACCATGGAAGACGGCACTACGGTAACAGTCGGTGTGGGCGAGGACGGCCTCCAGACGCTCTCGTCAGATGGAGCTACTCTGGCCATGCAGCAGGTCATGATGGGAGGTCACAgcgaggaggatgatgatgacgaAGAGGACGAAGAGGATGAGGACAATGATCCCTCCCACTCCGACATGACCAGGCTGGGCCTGGAGACCAGCGACTCGCTGTAGTAGGACTGAacgactcacacacacacacacacacacagttaacaTCGAGAGAGACATTTAAGGCGCATCAGAGCACTAAGAAAGAGACATTCACACAATCACCTCGGCTGACGTGTTGAAGGTCACAGAACATCCTCGAGCTGTCAAACAGCGCGTTTGAAGTACAGAGAAAGGGCttaaagccacacacacacacacacacacacacacacacaggtcaaaATGAAGACACAAGCACAAGTCTCTCTCACGGCGGAGCGCACGTATCATTTCCGACGCAGTTAGCCGAGTGCACTTTTTGTATGATACTGTAAACTTAAAGAAAGTGTTCAAAGCACATTTTGAAAGAGCTAAAAGGAaggaaatttaaaaagtaaaaaaaatatggatgCTGGATGATTTGGTTGTACTCATCCTCGTGTTCTGGGATGCTACGACGATGAGATTTCGTCTCTTGCATGCCTGTGTTTGCTTTAATCAGGCACCAGGAAAAAGAAGGAACTATTTTTCTAGTACACTGTCACAAGTGATCGGTGccaatttgtttgttttctccatTTGTTTGTTTCGCTCTGGTTTGCTATGTTTTGTAAGGAGTATTTATgtatgaaaaagacaaaaaaacacttttaacgTGCTCACCCTGTTTTGGAGGGGATTGTGGTAACTACTTAGTACAAAGTACAAAGAATGGCTATCCGCTAAAGGCATAGACTCTGAAGCCTTacgtttttacatttctaatgcCACAATGTGAGACGCTCATATTTATGGAAGCTTATTTCCgctacagaataaaaaaattgtgataatTGGTAATGGCGGTTATTGTCTCTTAAGATTTGAGGTTATATCTCAgatttctttttggttttttggtcagaattgtgagtttgtCACAATTAAATCTCACTTTTTTTGTcttacaattctttttttttttagcttttaattcTGAGTTAAtatctcaaataaaaaaaaattccttgaaattctgactttatatctttaATTCTCCAAttagtttatatctcacaattcagactaATTCAGAATAATTCTGAGGGGAGGAAAAAGCAGAAttgcaagggaaaaaaaaataagttagaATTATGagaatataaaatcacaattttcttttctaattCCATAAAATAAGCTTCCATACATAtctgatgtcacttcctgtgcaATCGGCATGGATACCGTGTCCAATAATGATACGTTTGCAAGGTTGTGATAATGTTTATGAAACTCAATGCCTGTAATTGTTGTATGAgaagaaaatgtgctttttaatgaTTCTATTGCATAAACTCATAAAGTGAAACAGAGAAGGACGTTAACAAGactttgtatttatgtatagcTATTTTTTAGCAAAGGGACTCATCGTTGATGTTAAACCCCTTCAGCTCAAACAtttatgacagattttttttttttattctgcatcaTTATGGACAGTTCATAGAGTTTTTGCAAGagacaaatgttttcaatatttaacGATTGATtgcatgtgttttcatttatcGTTGTAAAGAAacatacaatattattttttgaaacatAATGTATGCTCAATCAATAGAATCTTATCAGTGTAAACCCAATGAGATTGGTACAGTCGAGCTGTTAGTAAACACCTGATGatatatttcaacaaaaaataagcctcatatagca
>XM_043236511.1
caaaGTTGCCTGCGTGCCGTTACGCTGTGACGACATGGAAGAGCAGCGGGTCCCGATTGCTGCAGCCGCTTGTCATTGTGACGAAGATTGGCACTAAGTTTGGTGGAGCTGAAGATCAGCTTTATAGAATGCCCAAGCGTTGTCCACAGCAACAGTAACTATGATGACATCCCCATCGGTGTCCATGGAGGATTACCAAGAGGCTGAGCAGATGCAAGTGGGAGAGCAGACGGCGGGACAAGTGGAGGAGAGgttggaggaagaggaggaggaggagagagaggaagaggagagcgGCTCGGCTCCGTCCGAGCCACAAACTCCCATGGAGGTCTACAAGACGGCCATTTACAGACACCCCTTGTTCCCTCTGCTGGCGCTGCTCTTCGAGAAATGCGAGCAATCCACTCAGAGCTCGGAGTGCGTGACCTCGGCCAGCTTCGATGTGGATATCGAGAACTTCGTGCGGAACCAGGAGAAAGAAGGCAAGGCTTTCTTCAGCGAGGACCCCGATTTGGACAATCTGATGGTGAAGGCCATCCAGGTGTTACGGATTCACCTGCTAGAGCTGGAGAAGGTCAATGACCTGTGTAAAGATTTCTGCAGCCGCTACATCGCCTGCCTCAAGACCAAGATGAACAGCGAGACGCTGCTCAGCGGAGAGCCAGGAAGCCCCTACTCCCCGACACAGACACAGCCGCCGAGCTCCTTCTCTGGAGCCATGAGTCCCCAAGGTATCGTAGTGCCAGCGTCCGCTTTACAGCAAGGCAACGTTACCGTCACAGCTGTAAACCCCACACAGGTGGTAACAGGTGGTACGGTGTATCAGCCTGTTACAGTCGTCACTCCACAGGGGCAGGTGGTCACACAGACGCTGTCGCCCGGAACGATACGCATCCAGAACTCACAGCTTCAGCTGCAGCTGAACCAGGATCTAAACTTTTTCAGTCAGGAGGACAATTCATCTAAGGCCAAGAGAGGCATCCTGCCCAAACACGCCACCAATGTCATGCGTTCTTGGCTCTTCCAGCACATCGGTCACCCTTACCCTACAGAAGACGAGAAGAAACAGATCGCCCTGCAGACCAACCTCACCCTGCTGCAGGTCAACAACTGGTTTATTAACGCACGCCGGCGGATCCTTCAGCCCATGCTGGACGCCAGCTCCTCGGACACACCCAAGAGCAAGAAGAAGACGCCCCAAACACGACCTCTGCAGCGCTTCTGGCCCAACTCCCTCGCCTCCTCTGTGTCCCAGCAACAGGTCACCATGGAAGACGGCACTACGGTAACAGTCGGTGTGGGCGAGGACGGCCTCCAGACGCTCTCGTCAGATGGAGCTACTCTGGCCATGCAGCAGGTCATGATGGGAGGTCACAgcgaggaggatgatgatgacgaAGAGGACGAAGAGGATGAGGACAATGATCCCTCCCACTCCGACATGACCAGGCTGGGCCTGGAGACCAGCGACTCGCTGTAGTAGGACTGAacgactcacacacacacacacacacacagttaacaTCGAGAGAGACATTTAAGGCGCATCAGAGCACTAAGAAAGAGACATTCACACAATCACCTCGGCTGACGTGTTGAAGGTCACAGAACATCCTCGAGCTGTCAAACAGCGCGTTTGAAGTACAGAGAAAGGGCttaaagccacacacacacacacacacacacacacacacaggtcaaaATGAAGACACAAGCACAAGTCTCTCTCACGGCGGAGCGCACGTATCATTTCCGACGCAGTTAGCCGAGTGCACTTTTTGTATGATACTGTAAACTTAAAGAAAGTGTTCAAAGCACATTTTGAAAGAGCTAAAAGGAaggaaatttaaaaagtaaaaaaaatatggatgCTGGATGATTTGGTTGTACTCATCCTCGTGTTCTGGGATGCTACGACGATGAGATTTCGTCTCTTGCATGCCTGTGTTTGCTTTAATCAGGCACCAGGAAAAAGAAGGAACTATTTTTCTAGTACACTGTCACAAGTGATCGGTGccaatttgtttgttttctccatTTGTTTGTTTCGCTCTGGTTTGCTATGTTTTGTAAGGAGTATTTATgtatgaaaaagacaaaaaaacacttttaacgTGCTCACCCTGTTTTGGAGGGGATTGTGGTAACTACTTAGTACAAAGTACAAAGAATGGCTATCCGCTAAAGGCATAGACTCTGAAGCCTTacgtttttacatttctaatgcCACAATGTGAGACGCTCATATTTATGGAAGCTTATTTCCgctacagaataaaaaaattgtgataatTGGTAATGGCGGTTATTGTCTCTTAAGATTTGAGGTTATATCTCAgatttctttttggttttttggtcagaattgtgagtttgtCACAATTAAATCTCACTTTTTTTGTcttacaattctttttttttttagcttttaattcTGAGTTAAtatctcaaataaaaaaaaattccttgaaattctgactttatatctttaATTCTCCAAttagtttatatctcacaattcagactaATTCAGAATAATTCTGAGGGGAGGAAAAAGCAGAAttgcaagggaaaaaaaaataagttagaATTATGagaatataaaatcacaattttcttttctaattCCATAAAATAAGCTTCCATACATAtctgatgtcacttcctgtgcaATCGGCATGGATACCGTGTCCAATAATGATACGTTTGCAAGGTTGTGATAATGTTTATGAAACTCAATGCCTGTAATTGTTGTATGAgaagaaaatgtgctttttaatgaTTCTATTGCATAAACTCATAAAGTGAAACAGAGAAGGACGTTAACAAGactttgtatttatgtatagcTATTTTTTAGCAAAGGGACTCATCGTTGATGTTAAACCCCTTCAGCTCAAACAtttatgacagattttttttttttattctgcatcaTTATGGACAGTTCATAGAGTTTTTGCAAGagacaaatgttttcaatatttaacGATTGATtgcatgtgttttcatttatcGTTGTAAAGAAacatacaatattattttttgaaacatAATGTATGCTCAATCAATAGAATCTTATCAGTGTAAACCCAATGAGATTGGTACAGTCGAGCTGTTAGTAAACACCTGATGatatatttcaacaaaaaataagcctcatatagca

Function

symbol description
pknox1.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pharyngeal system development and retinoic acid receptor signaling pathway. Predicted to be located in nucleus. Is expressed in brain; head; neural tube; and pectoral fin. Orthologous to human PKNOX1 (PBX/knotted 1 homeobox 1).

NR:

description
homeobox protein PKNOX1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0060037 pharyngeal system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24891 PKNOX; homeobox protein PKNOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236500.1 True 3186 mRNA 0.45 11 22851708 22860711
XM_043236511.1 False 3172 mRNA 0.45 11 22851708 22860712

Neighbor

gene id symbol gene type direction distance location
pdxkb pdxk,pdxkb,LOC108428208,LOC103021965,LOC107676865,LOC108258310,LOC107718319,LOC105019670,LOC106574311 coding downstream 14300 22819346 ~ 22837408 (-)
agpat3 agpat3,LOC107746273,LOC107676863,LOC107692122 coding downstream 33696 22800579 ~ 22818012 (-)
dleu7 LOC107746276,LOC107560974 coding downstream 53215 22796292 ~ 22798493 (-)
spryd7a spryd7,spryd7a,LOC107580268,LOC107676840,LOC107746271,LOC107718900 coding downstream 116521 22732039 ~ 22735187 (-)
kpna3 kpna3,LOC107746270,LOC107560982,LOC103046682,LOC107676880 coding downstream 120824 22715525 ~ 22730884 (-)
si:dkey-22n8.3 NA coding upstream 156 22860868 ~ 22864691 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding upstream 49283 22909995 ~ 22913608 (-)
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding upstream 291790 23152502 ~ 23203136 (-)
LOC122348966 LOC107675992,LOC107569046,LOC107729366 coding upstream 1172180 24032892 ~ 24038656 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding upstream 1230696 24091408 ~ 24101289 (-)
G5466 NA non-coding downstream 360 22851012 ~ 22851348 (-)
G5465 LOC107676845,LOC107746297,LOC107560973,LOC107692180,LOC107718848,LOC107603005 non-coding downstream 9684 22841802 ~ 22842024 (-)
G5464 NA non-coding downstream 12116 22838956 ~ 22839592 (-)
LOC122341430 NA non-coding downstream 86593 22759628 ~ 22765115 (-)
G5445 mcf2l,LOC107746267 non-coding downstream 169612 22681649 ~ 22682096 (-)
LOC122342025 NA non-coding upstream 112967 22973679 ~ 22978634 (-)
G5577 NA non-coding upstream 758988 23619700 ~ 23622881 (-)
LOC122346633 NA non-coding upstream 847701 23708413 ~ 23713457 (-)
G5583 NA non-coding upstream 872462 23733174 ~ 23735603 (-)
G5568 NA non-coding upstream 875264 23735976 ~ 23736893 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 249060 22539684 ~ 22602648 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other downstream 522779 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 564187 22272818 ~ 22287521 (-)
LOC122348907 NA other downstream 1051964 21761881 ~ 21799744 (-)
G5108 NA other downstream 1078946 21724387 ~ 21772762 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 4119 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 53188 22913900 ~ 22916405 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other upstream 157526 23018238 ~ 23030310 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 910312 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 1172151 24032863 ~ 24172062 (-)

Expression


Co-expression Network