XLOC_006581 (psda)


Basic Information

Item Value
gene id XLOC_006581
gene name psda
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22740038 ~ 22774491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012715
TGTCTGAGTCTGATCCAGAGGTAGCTGAGCGATTGGCTCTGGGCAGCACTGAAACTCTGGCCAATGGCAACAAGGCTGATCTCCAAGCTGCAAAACGGCTGGCCAAACGCTTGTACACTCTTGATGGATTTAAGAAGTCAGATGTGGCACGGCACCTGAGCAAGAACAATGAGTTCAGTCACATGGTGGCGGAGGAGTACCTCAGTCATTTTAACTTCTCAGGGATGATGGTGGATCAGGCGCTGAGgGTGTTTTTAAAAGAGTTTGCTCTAATGGGAGAGACACAGGAGAGAGAACGAGTTCTGTCCCATTTCTCCAAAAGATACCTCCAGTGCAACCCGAAGACTATACCATATGAAGACAGTGTTCACACATTGACTTGTGCCCTGATGTTGCTCAACACTGATCTGCACGGTCATaaTGTGGGCAAGAGGATGTCCTGCATGCAGTTTATTGGTAACCTGCAAGGGCTGAATGATGGGCAGGACTTCCCAAAAGATCTTCTTAAGGCTCTCTACAACTCcatcaaaaatgaaaaactgcagtGGACAATCGATGAGGAAGAACTGCGGAAGTCTTTCTCTGAGATGGACGGCAGGAAAGACTCTGCATCGCACACTATGAAGCGGATCAGCAGCGGAGGAAACTCTCTGATCAGTGTTGCACAGCAGTCCAGTGCACAGGTCTATAAGAACGGCTTCCTCGTGCGCAAAGTCCATGCTGATCCTGATGGGAAGAAAActcCACGAGGTAAAAGAGGGTGGAAAACGTTTTACGCTATCTTAAAAGGACTGATTCTCTACCTACAAAAGGATGAATATCGTCCAGATAAGCAGCTGTCAGATGAAGACTTGAAAAATGCAGTATCAATCCATCATTCTCTAGCCATGCGGGCAGCAGACTATAGCAAGAGACCAAATGTGTTTTACCTGCGCACTGCTGACTGGAGAGTCTTTCTCTTCCAGGCACCGAACGCAGAGCAAATGCAGTCCTGGATTACTCGCATCAACACGGTGGCAGCCATGTTTTCTGCACCTCCATTCCCAGCAGCCATCGGCTCCCAAAAGAAGTTTAGCCGTCCTCTTCTGCCGGGCTCAAACACCAAGCTCTCACAGGAGGAGCAGCTCAAATCTCATGAAACACGTTTTCGGactgtttctgctgagctccagGAACTGCGCTCTACACCTCAAGACCGCAAGACCAAAAGCAGGGACCAAGAAGAATACAAGCAAAGGGAAGAGTATCTTGACTTTGAGAAAACACGTTACGGAACATATACAATGCTGCTGAGAACTAAGATCCGCATGGGAGAAACGGACCTGGCGGCATTTGAGGGCCGTTTGTTTGAGGACAGCGGTTTACAGAGGACCCACTCCAGCCCTACGTTACCCCAGGACATCAGCCATGCCAGCAGCACCAAAGAAACCAGCAGGAGCAGCAGCGGCAGCAGCAGGAGGACCAAACGCTCAGACTCTCAGAGACACAGCTTCAAACAGGCTGCCAAACAGTGA
>TCONS_00012716
CACAGCCTAGGAGCCTTGGCGGAaaagttttcatttttctttctcctGTACCATGATTCTATCTTACCATTGTTTCAAGAACAAACAGTCAGCCCTCATCCCCTTTTTTTGTCGAGTCTCCTCCCCTGACTAGTTTGAGAACTATCCAGTTGGAGGAGGTTGGGAGCACTTCGGAACAAACCAAAGACCTATAGAGGGGTGATCTGGTGTGGCAAAGTTTTTAGTACTGTTCGTATGTCTGACTTTGGAATGCGGTGGTTTGAAGGAAGAGCTGGGTCACAGAGAGAGAGGCCATCACGACCAGTGTCTGAGTCTGATCCAGAGGTAGCTGAGCGATTGGCTCTGGGCAGCACTGAAACTCTGGCCAATGGCAACAAGGCTGATCTCCAAGCTGCAAAACGGCTGGCCAAACGCTTGTACACTCTTGATGGATTTAAGAAGTCAGATGTGGCACGGCACCTGAGCAAGAACAATGAGTTCAGTCACATGGTGGCGGAGGAGTACCTCAGTCATTTTAACTTCTCAGGGATGATGGTGGATCAGGCGCTGAGgGTGTTTTTAAAAGAGTTTGCTCTAATGGGAGAGACACAGGAGAGAGAACGAGTTCTGTCCCATTTCTCCAAAAGATACCTCCAGTGCAACCCGAAGACTATACCATATGAAGACAGTGTTCACACATTGACTTGTGCCCTGATGTTGCTCAACACTGATCTGCACGGTCATaaTGTGGGCAAGAGGATGTCCTGCATGCAGTTTATTGGTAACCTGCAAGGGCTGAATGATGGGCAGGACTTCCCAAAAGATCTTCTTAAGGCTCTCTACAACTCcatcaaaaatgaaaaactgcagtGGACAATCGATGAGGAAGAACTGCGGAAGTCTTTCTCTGAGATGGACGGCAGGAAAGACTCTGCATCGCACACTATGAAGCGGATCAGCAGCGGAGGAAACTCTCTGATCAGTGTTGCACAGCAGTCCAGTGCACAGGTCTATAAGAACGGCTTCCTCGTGCGCAAAGTCCATGCTGATCCTGATGGGAAGAAAActcCACGAGGTAAAAGAGGGTGGAAAACGTTTTACGCTATCTTAAAAGGACTGATTCTCTACCTACAAAAGGATGAATATCGTCCAGATAAGCAGCTGTCAGATGAAGACTTGAAAAATGCAGTATCAATCCATCATTCTCTAGCCATGCGGGCAGCAGACTATAGCAAGAGACCAAATGTGTTTTACCTGCGCACTGCTGACTGGAGAGTCTTTCTCTTCCAGGCACCGAACGCAGAGCAAATGCAGTCCTGGATTACTCGCATCAACACGGTGGCAGCCATGTTTTCTGCACCTCCATTCCCAGCAGCCATCGGCTCCCAAAAGAAGTTTAGCCGTCCTCTTCTGCCGGGCTCAAACACCAAGCTCTCACAGGAGGAGCAGCTCAAATCTCATGAAACACGTTTTCGGactgtttctgctgagctccagGAACTGCGCTCTACACCTCAAGACCGCAAGACCAAAAGCAGGGACCAAGAAGAATACAAGCAAAGGGAAGAGTATCTTGACTTTGAGAAAACACGTTACGGAACATATACAATGCTGCTGAGAACTAAGATCCGCATGGGAGAAACGGACCTGGCGGCATTTGAGGGCCGTTTGTTTGAGGACAGCGGTTTACAGAGGACCCACTCCAGCCCTACGTTACCCCAGGACATCAGCCATGCCAGCAGCACCAAAGAAACCAGCAGGAGCAGCAGCGGCAGCAGCAGGAGGACCAAACGCTCAGACTCTCAGAGACACAGCTTCAAACAGGCTGCCAAACAGTGA
>TCONS_00012717
ACAGATCATTATTATAGAGTCCACTACATAATTCTGGCCTTTAGAATTGATTATGGATAGATGCGCACTGTGTGTTCAGCACTATGTTGAAATGGAGATCAGCGGCAGGGACAAAGTAGCAAGGCAAGACAAAGAGAGGAAGAGAGGCTTGGAGAGAGGGGAAAAGGGGGAGTAAACTGTTGTGAGAGGAAATACAGGGCATATCCACCAGCGAAAAATAGCTCCGCTGACAAGAGAAGAGGAACACACATTCACATCCACAACTAGGGAAGTGCGAGGAGGGAACAGCCGGCAGAAAAAAAGACAGACGAACCGTTGTATCTGATTTGACTGTGGGCACAAAAAGAGCTTGCAAAAGTTCAGAGTGGGATAAAAGCACCAGCAACGGGACAACTAAAGGACTAATGCCAGTTCTGAGGAGTTACAGAGGCAGAGGGTCAGATTTCTTCAAAAACCTCCTCAGGCTAGTTCTGGACTATAGGAGGTTCAGGGAAGGGCCGGAATGTGGAAGATTGGATGCTGCATATTTAAGCAAGTCACCTGGATATGTTAGGTGTGAAGGGGCGGGGCTAGGCTGATGGCTTGTTATTTGCTCTGCTGGGGAGGCGGAGCTTTGAAGGATAATTACATGTATGCCCCACATCCCTCCATATATCGAGAGAGGCCATCACGACCAGTGTCTGAGTCTGATCCAGAGGTAGCTGAGCGATTGGCTCTGGGCAGCACTGAAACTCTGGCCAATGGCAACAAGGCTGATCTCCAAGCTGCAAAACGGCTGGCCAAACGCTTGTACACTCTTGATGGATTTAAGAAGTCAGATGTGGCACGGCACCTGAGCAAGAACAATGAGTTCAGTCACATGGTGGCGGAGGAGTACCTCAGTCATTTTAACTTCTCAGGGATGATGGTGGATCAGGCGCTGAGgGTGTTTTTAAAAGAGTTTGCTCTAATGGGAGAGACACAGGAGAGAGAACGAGTTCTGTCCCATTTCTCCAAAAGATACCTCCAGTGCAACCCGAAGACTATACCATATGAAGACAGTGTTCACACATTGACTTGTGCCCTGATGTTGCTCAACACTGATCTGCACGGTCATaaTGTGGGCAAGAGGATGTCCTGCATGCAGTTTATTGGTAACCTGCAAGGGCTGAATGATGGGCAGGACTTCCCAAAAGATCTTCTTAAGGCTCTCTACAACTCcatcaaaaatgaaaaactgcagtGGACAATCGATGAGGAAGAACTGCGGAAGTCTTTCTCTGAGATGGACGGCAGGAAAGACTCTGCATCGCACACTATGAAGCGGATCAGCAGCGGAGGAAACTCTCTGATCAGTGTTGCACAGCAGTCCAGTGCACAGGTCTATAAGAACGGCTTCCTCGTGCGCAAAGTCCATGCTGATCCTGATGGGAAGAAAActcCACGAGGTAAAAGAGGGTGGAAAACGTTTTACGCTATCTTAAAAGGACTGATTCTCTACCTACAAAAGGATGAATATCGTCCAGATAAGCAGCTGTCAGATGAAGACTTGAAAAATGCAGTATCAATCCATCATTCTCTAGCCATGCGGGCAGCAGACTATAGCAAGAGACCAAATGTGTTTTACCTGCGCACTGCTGACTGGAGAGTCTTTCTCTTCCAGGCACCGAACGCAGAGCAAATGCAGTCCTGGATTACTCGCATCAACACGGTGGCAGCCATGTTTTCTGCACCTCCATTCCCAGCAGCCATCGGCTCCCAAAAGAAGTTTAGCCGTCCTCTTCTGCCGGGCTCAAACACCAAGCTCTCACAGGAGGAGCAGCTCAAATCTCATGAAACACGTTTTCGGactgtttctgctgagctccagGAACTGCGCTCTACACCTCAAGACCGCAAGACCAAAAGCAGGGACCAAGAAGAATACAAGCAAAGGGAAGAGTATCTTGACTTTGAGAAAACACGTTACGGAACATATACAATGCTGCTGAGAACTAAGATCCGCATGGGAGAAACGGACCTGGCGGCATTTGAGGGCCGTTTGTTTGAGGACAGCGGTTTACAGAGGACCCACTCCAGCCCTACGTTACCCCAGGACATCAGCCATGCCAGCAGCACCAAAGAAACCAGCAGGAGCAGCAGCGGCAGCAGCAGGAGGACCAAACGCTCAGACTCTCAGAGACACAGCTTCAAACAGGCTGCCAAACAGTGA

Function

symbol description
psda Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Orthologous to human PSD (pleckstrin and Sec7 domain containing).

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-44 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Orthologous to human PSD (pleckstrin and Sec7 domain containing).

Ensembl:

ensembl_id ENSDARG00000078102

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012715 False 1514 mRNA 0.49 12 22740038 22766445
TCONS_00012716 False 1818 mRNA 0.49 13 22740038 22771708
TCONS_00012717 True 2191 mRNA 0.49 13 22740038 22774491

Neighbor

gene id symbol gene type direction distance location
XLOC_006580 glud1a coding downstream 41014 22679084 ~ 22699024 (-)
XLOC_006579 mmrn2a coding downstream 93904 22619684 ~ 22646134 (-)
XLOC_006578 BX649385.1 coding downstream 544870 22191361 ~ 22195168 (-)
XLOC_006577 NA coding downstream 800073 21925701 ~ 21939965 (-)
XLOC_006576 si:dkey-191g9.5 coding downstream 1000896 21712284 ~ 21739142 (-)
XLOC_006582 CR550304.1 coding upstream 3569 22778060 ~ 22784433 (-)
XLOC_006583 si:ch211-1n9.6 coding upstream 44994 22819485 ~ 22819667 (-)
XLOC_006584 pbld coding upstream 65330 22839821 ~ 22843805 (-)
XLOC_006585 BX530068.1 coding upstream 69339 22843830 ~ 22847484 (-)
XLOC_006586 pbld2 coding upstream 75305 22849796 ~ 22862133 (-)
XLOC_006471 BX537274.2 misc downstream 12475133 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 21913813 825904 ~ 826225 (-)
XLOC_006570 NA non-coding downstream 1592656 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 1660627 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 2008150 20729834 ~ 20731888 (-)
XLOC_006595 NA non-coding upstream 438268 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 633538 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1186801 23961292 ~ 23961406 (-)

Expression


Co-expression Network