phox2ba (LOC107551569,LOC107754147,LOC107656929)


Basic Information

Item Value
gene id phox2ba
gene name LOC107551569,LOC107754147,LOC107656929
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11489952 ~ 11492033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236864.1
ATGGAGTACAGCTACCTGCCGTCTGGGTACGAGTCTGGGATGGACACCGGCCGAGCTTCTAGCTTCAGCTCCTGCAGTCAGCCCTTCACTTTTCAGTATAACAGGTGCAGTCTGGGAAACACGAGCAGCTGCCATTTCCTCACACCTGGTTCTCCCCAACCCTCACACTACATAACAGTTCATCGTAATCTTTTGGCTTACGAGCGAGGTGTCCAGGAGAGACGCAAACAAAGGCGCGTCCGCACCATCTTCACGAGCGCGCAGCTGAAAGCGCTCGAGCGCGTCTTCTCACAGACTCAGTATCCAGACATCTACACACGAGAGGAGCTCGCGCAGGAGATCCACCTCACCGAAGCCCGAGTCCAGGTCTGGTTCCAGAACAGACGTGCTAAATTTCGCAAACAGGAGCGTGCAGCTACGTGGACTGGGTCACCTTCCAACGTGAACAGTTCCCCTTCCTACGACAGCTCCAAAACGACGACAGTCCCTGACCCAGACAGCACACAACCCATGCTTAACCTAAACCCAGACCACAAACAGAACAGCAGAGGCAGTCTCAGAGAGGATCAGGCTCCAGACGAACTGCCCTTGTTAGGGGTCCCTTCTCTCGAAGCTCAGAGGTCAGGAGGTCACCAAACTCACTGTGCAACTACTTCCTGCATGTGTTGA

Function

NR:

description
PREDICTED: paired mesoderm homeobox protein 2B-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236864.1 True 669 mRNA 0.55 3 11489952 11492033

Neighbor

gene id symbol gene type direction distance location
pgm2 pgm2,LOC107551595,LOC107591526,LOC107746017 coding downstream 96126 11383791 ~ 11393826 (-)
tbc1d1 tbc1d1,LOC107754138,LOC107656363,LOC107702353,LOC107746016 coding downstream 107595 11336559 ~ 11382357 (-)
klf3 klf12,LOC107565970,LOC107656370,LOC107754179,LOC107702350,LOC107746019 coding downstream 165614 11310593 ~ 11324338 (-)
fam114a1 LOC107754137,LOC107656378,LOC107702351,LOC107746018,LOC107591522 coding downstream 179830 11302481 ~ 11310122 (-)
LOC122347963 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding downstream 503933 10982094 ~ 10986019 (-)
trnai-aau NA coding upstream 6252 11498285 ~ 11498358 (-)
rbm47 rbm47,LOC107656158,LOC107754149,LOC107702361,LOC107746010 coding upstream 116528 11608561 ~ 11631643 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107746009,LOC107702362,LOC107591534 coding upstream 144127 11636160 ~ 11642208 (-)
kitb kitb,LOC107754153,LOC107656054,LOC107746005,LOC107702363,LOC107591536 coding upstream 162871 11654904 ~ 11666734 (-)
ecpas kiaa0368,LOC107702367,LOC107551559,LOC107656759 coding upstream 201484 11693517 ~ 11710803 (-)
G2532 NA non-coding downstream 291144 11198578 ~ 11198808 (-)
LOC122347981 NA non-coding downstream 483048 11004773 ~ 11006904 (-)
G2391 NA non-coding downstream 490867 10998334 ~ 10999085 (-)
G2381 cpe,LOC107548348,LOC107745061,LOC107591555,LOC107750458 non-coding downstream 623904 10861565 ~ 10866048 (-)
G2377 NA non-coding downstream 650650 10837968 ~ 10839302 (-)
G2630 NA non-coding upstream 219940 11711973 ~ 11712523 (-)
G2631 fbxo10,si:dkey-245p14.2,LOC107702368,LOC107591540,LOC107750413,LOC107656048,LOC107754157 non-coding upstream 221411 11713444 ~ 11715227 (-)
G2632 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107754157,LOC107591540,LOC107702368,LOC107750413 non-coding upstream 224100 11716133 ~ 11716935 (-)
G2634 fbxo10,LOC107754157,LOC107656048,LOC107702368,LOC107591540,LOC107750413,LOC101884743 non-coding upstream 227695 11719728 ~ 11720175 (-)
G2635 fbxo10,LOC107656048,LOC107754157,LOC107702368,LOC107591540 non-coding upstream 228268 11720301 ~ 11721030 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other downstream 78239 11407565 ~ 11411713 (-)
LOC122343263 NA other downstream 93376 11395734 ~ 11396576 (-)
klhl5 klhl5,LOC107565971,LOC107754136,LOC107746020,LOC107656383,LOC107702349,LOC108412945 other downstream 196904 11242031 ~ 11293048 (-)
G2401 NA other downstream 436011 11053154 ~ 11053941 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other downstream 508586 10953875 ~ 10981366 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other upstream 18406 11510439 ~ 11512833 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other upstream 22118 11514151 ~ 11580717 (-)
apela NA other upstream 291596 11783629 ~ 11788666 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other upstream 605877 12097910 ~ 12117383 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other upstream 845929 12337962 ~ 12366108 (-)

Expression


Co-expression Network