LOC122342830


Basic Information

Item Value
gene id LOC122342830
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12328136 ~ 12331902 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236969.1
ATGGAAATGATGGAGTTTACCTCAGCAGACAAAACTACAGTTATCATCCAAATAAATCCACAAGAGGCAAAAGACAGCGCCATTTATGTTGATGGACTGGAGGATGGAGAATTAAATCACAATGCAGCTCTTAAAGGATTTTTCAAAGCAGAGCCAAAGGCACTTGGGACTGTGCAGATAATGACTGGAGTGATGGTTTTCTTACTTGGTATTGTACTCACAAATCTGAGCTACAGTTTTCATATGATGTCTGTATACGGTTTCATCACTTACTGGGGATCTGCAATTTACATCAGTACTGGATCTCTGTCTGTTGCAGCACAGAATCAGTTTCATCTATGTGTGCTGAAAGCCTCTCTTGGAATGAATTTGTTCAGCATCATAACTGCAGAAACAGCCATCATTCTGGCGAGTATGGACTTATCACGGGTTTCTTTATACAATTGCTGCTATGATGACAAGAGATCCTGTTTGGGGATCACTGGAATATTGCTGGTGTTATCCATCCTTCAGTTGATCATCTCCATCGCTATCTTAGTATTTGCCTGCAAAGTCGCCTGCAAACCTGAGTCTACAGTGGTCAACGTGTCACTAAACCAGGGATACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236969.1 True 609 mRNA 0.42 6 12328136 12331902

Neighbor

gene id symbol gene type direction distance location
LOC122351007 NA coding upstream 5678 12318615 ~ 12322458 (+)
med28 med28,LOC107702388,LOC107656902 coding upstream 15621 12310519 ~ 12312515 (+)
spock3 spock3,LOC107702382 coding upstream 171558 12130310 ~ 12156578 (+)
prss12 prss12,LOC107551563,LOC107656290,LOC107754187,LOC107750419,LOC107591549,LOC107702379 coding upstream 369980 11927441 ~ 11958156 (+)
apbb2b apbb2,apbb2b,LOC107656070,LOC107551575 coding upstream 418122 11867305 ~ 11910014 (+)
pax5 pax5,LOC107702396 coding downstream 218026 12549928 ~ 12590890 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding downstream 549217 12881119 ~ 12887654 (+)
zmynd10 zmynd10,LOC107702405 coding downstream 567724 12899626 ~ 12905289 (+)
gtf2e2 gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408 coding downstream 634863 12966765 ~ 12977670 (+)
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding downstream 753947 13085849 ~ 13123735 (+)
G2782 NA non-coding upstream 37670 12290122 ~ 12290466 (+)
G2767 LOC107548350,LOC107745058 non-coding upstream 77358 12248498 ~ 12250778 (+)
G2711 NA non-coding upstream 405771 11920739 ~ 11922365 (+)
G2648 NA non-coding upstream 478859 11848131 ~ 11849277 (+)
G2651 NA non-coding upstream 480124 11793561 ~ 11848012 (+)
G2790 gria2a,LOC107591557,LOC107655932,LOC107750427,LOC107548351,LOC107702389 non-coding downstream 5740 12337642 ~ 12348940 (+)
G2806 NA non-coding downstream 58210 12390112 ~ 12392194 (+)
G2791 NA non-coding downstream 60708 12392610 ~ 12395729 (+)
G2820 NA non-coding downstream 94643 12426545 ~ 12437258 (+)
G2821 NA non-coding downstream 107830 12439732 ~ 12440108 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 484076 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 545066 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 603236 11711940 ~ 11724900 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other upstream 1346780 10844956 ~ 10981356 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 1838052 10483640 ~ 10490084 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 312777 12644679 ~ 12658507 (+)
dnah6 dnah6,LOC106610484 other downstream 327360 12659262 ~ 12724458 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 871157 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 1184306 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 1782529 14114431 ~ 14118433 (+)

Expression


Co-expression Network