xpa (xpa,LOC107758894,LOC107565010,LOC107692611,LOC107557957,LOC107723178)


Basic Information

Item Value
gene id xpa
gene name xpa,LOC107758894,LOC107565010,LOC107692611,LOC107557957,LOC107723178
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7687375 ~ 7690927 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237381.1
GATATCCAAAGAAGAAAAGCTCTTCACAATAGTGCACGCTCGTAAACATTAAACGTACACAGTGGAATGGTGCTTtcaagtttttattaaatttatccCATCTCGGACCAACCGTAAAAGCGAAAATAACGTTTCCGACTGGTCATGGACGTGCCAGAAGCCAGTGATTCTCAAGATGCATCGCTGGATGCCGCAAACCCTTCAAACAATTCCAACGAGACCTTAACACCGCACATGTTGGCCAAAATCGAAAGGAATAGACAACGGGCGTTAATGCTCAGGCAAGCCAGACTTGCAAACCGACCGTCATCAGCTCCAGAAGGAGCAACATGTGCCAAAGTGGCAAAAACTATAGACTCGGGTGCAGGCTTCTTTATTGAGGAGGAGACAACAGAGGATGAACAGCAAGAAAAGAGAGTGGTTGAGCAACCAGCCCCAGTGATGGAGCCTGATTATCTAATGTGTGAAGAGTGTCTAAAACCATTCATGGACTCTTATCTTAGCAACAGTTTTGATCTATCtgtgtgtgataaatgcagAGACAACGAAGTGAAGCACAAGCTAATATCTCGCTCAGAAGCCAAACAGAATTTCCTACTGAAGGATTGTGATCTGGATAAGAGGGAGCCGCCGCTGAGATTTATTCTCAGGAAAAATCCTCACAATCCTCGCTGGGGAGACATGAAACTCTACTTAAAAACACAGgTGGTAAAGCGCTCTCTGGAGGTGTGGGGCAGCGAGGAGGCTCTGGAGGAGGCCAAGGAGAGCAGAGAGGAGAACAGGGAGGTGCAAAAGCAGAAACGAtttaataaaaaggttaaaGagTTGAGGCGGGCCGTCAGGAGCAGTATGTTTAAGAAAGACACCAGCGTTCATCAGCATGTTTACGGCCCGGAGGAGCTGCTAAATGAAGAGGAAGATCTCTACAAGAAAGTGTGTCAAACATGTGGACATGAACTGACTTTTGAAAAGATGTAAACACGTCTTGGAGGTCTCACTGCTGTGGCCACTGTTCAGGGAAGAAGCAGGATCCAGATCCACATCAGCGAAAAGTAGTACTGATCTTACTTCTGGTCCTCAACACATTCTCTTTACTAGATGTCAGGTAACAAAACAGGTTTGCATCAGTTTCCGCTTTGGAGTATCTGAAACGCTTAACCAGCATAGAAAGTTTAGAAATGTCAgcattaatgaatgaaaattgcTCAAATGATCATTCCAGAATGATAGTtaactcaccctcgtgtcaatTAAGATGCATGAAGAAGTTTCCAGGATTTTTCTCTATAAAGTGGGCTTCAAATGGAGGTCCAAATTTCAGTTTCAGTGAATTAAGAAGGCTCTTATCTTTAAAAACGATCTGTGGTTTTctgaaaatatactttttaaaccACAAATGCTCATCTTAGTGCTTAGTGCATAAATTAGTGCttccaaatgattaattgcgattaattgcatccagaaaattgtttacatgtttatatgtatatatatgcatcttttcaaaatatatcctgaatgcttgtatttatatgtttataataaatgtaca

Function

symbol description
xpa Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA repair. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in nucleus. Predicted to be part of nucleotide-excision repair factor 1 complex. Is expressed in liver. Human ortholog(s) of this gene implicated in xeroderma pigmentosum and xeroderma pigmentosum group A. Orthologous to human XPA (XPA, DNA damage recognition and repair factor).

NR:

description
PREDICTED: DNA repair protein complementing XP-A cells isoform X1

GO:

id name namespace
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10847 XPA; DNA-repair protein complementing XP-A cells

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237381.1 True 1555 mRNA 0.42 7 7687375 7690927

Neighbor

gene id symbol gene type direction distance location
saraf LOC107758892,LOC107557959,LOC107665975,LOC107692614 coding upstream 2774 7680870 ~ 7684601 (+)
slc24a2 slc24a2,LOC107692616,LOC107758891,LOC107665969,LOC107564132,LOC107557960,LOC108441320 coding upstream 7003 7663335 ~ 7680372 (+)
tspan5b tspan5b,tsn5,LOC107692617,LOC107557938,LOC107758863,LOC108441323,LOC105893813,LOC103360687,LOC104950293 coding upstream 26843 7651722 ~ 7660532 (+)
snx8b snx8b,LOC107692712,LOC107758890,LOC107565397,LOC107665942,LOC107723171 coding upstream 63559 7615995 ~ 7623816 (+)
LOC122351150 LOC107692714,LOC107577730 coding upstream 125088 7560832 ~ 7562287 (+)
LOC122343081 LOC107723175,LOC107692611,LOC107565010,LOC107665966,LOC107758893,LOC107557956 coding downstream 5484 7696411 ~ 7704131 (+)
stra6l stra6l,LOC107564087,LOC107665941,LOC107692609,LOC107758896,LOC107557952 coding downstream 40861 7731788 ~ 7738618 (+)
tdrd7a LOC107723197,LOC107692608,LOC107564078,LOC107557954,LOC107665979,LOC107758895 coding downstream 47839 7738766 ~ 7749449 (+)
tmod1 tmod1,LOC107665961,LOC107692607,LOC102782831 coding downstream 58669 7749596 ~ 7761949 (+)
gne LOC107665959,LOC107723184,LOC107692604,LOC107758846 coding downstream 83884 7774811 ~ 7792042 (+)
G1698 NA non-coding upstream 38751 7647889 ~ 7648624 (+)
G1697 NA non-coding upstream 59064 7624948 ~ 7628311 (+)
G1706 NA non-coding upstream 80875 7598267 ~ 7606500 (+)
G1677 NA non-coding upstream 105285 7513555 ~ 7582090 (+)
LOC122330513 NA non-coding upstream 279170 7401131 ~ 7408205 (+)
G1732 NA non-coding downstream 15958 7706885 ~ 7708131 (+)
G1751 NA non-coding downstream 114778 7805705 ~ 7806252 (+)
G1752 NA non-coding downstream 116424 7807351 ~ 7808014 (+)
G1750 LOC107692600 non-coding downstream 117376 7808303 ~ 7809221 (+)
G1753 NA non-coding downstream 120056 7810983 ~ 7811354 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 535155 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 827105 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 841827 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 905234 6771486 ~ 6782141 (+)
G1414 NA other upstream 1150418 6533502 ~ 6536957 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 29338 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 263784 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 915898 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 932231 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 1009513 8700440 ~ 8705873 (+)

Expression


Co-expression Network