glrba (glrba,LOC107702391,LOC107591559,LOC108443987,LOC107655919,LOC107548353)


Basic Information

Item Value
gene id glrba
gene name glrba,LOC107702391,LOC107591559,LOC108443987,LOC107655919,LOC107548353
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12368875 ~ 12389717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238057.1
CCTCATTTAGTTCTGTGGGCTCAGTGTAAATCTGTTAAGAGAGACGGCTGTGATTTAATGTGACACAAAGGACGAATCGAGGTGAGGAGGAGCTGTTTCCAAAACCACTAACGTCTCGTGAATTCTTAAGCCTCTCTCGCGTAGTACACTCAGGGATCGCGGCTTTCTTTAATTCAAAACGCTTTCATTTGTTCAGCGCTTGATTTCGCACAAGACCGGTCCTTTACATCTCCCGAGTCACTTAATGCTAGGCTGTAGTCGCGCAGTTAGGTTTCGTAAGTTAAACCCAGGCGGAGAAAGTGACGCCGGTGCGGGACAGCGCGTGCTTCATCGCGCGAGagcacagcagcagcagcagcagcagcctcaCTGCAGCGGGACAGGTGCATCCACGCGCAATCCGTCACACACACCGAAACTGAGCCCGAGCGTGGATGTGCATGCAGTGACAGACATGTCGGTTGGCTGGAAGCGTGCTTGAGCGGGGGGACGCTAACATCAGCTGTGTTTTCTTCATGAGGTGTGCAGTCATGGTTCTCAAAGGGCTGAtcttgttgttgctgctggtaCAGTTCTCTGCAGAGAGCACTGCCAAAGAAGGAGGCAAACCCAAGAAGGGAAAAAAGGGCAAGCAAGTCATCTGTCCCTCTCAGTTATCAGCAGAGGACTTGGACAGAGTCCCAGCCAACTCAACCAGCAACATACTGAACCGTTTGTTGATGACATATGATTCACGAATACGACCAAACTTCAAAGGCATCCCAGTGGAGGATAAGGTGAACATCTTCATCAACAGCTTTGGGTCGATCCAGGAGACCACAatgGATTACCGTGTTAATATATTCCTGCGCCAGCGCTGGAATGACCCACGGCTACGGTTACCAACTGATTTTAAGTCAGATGCATTGACCGTTGATCCAAAAATGTTCCAGTGCCTGTGGAAACCAGATCTGTTTTTCGccaatgaaaaaaatgctaattttcaCGACGTTACACAGGAAAACATACTCTTGTTCATTTTCCGCAATGGAGATGTCCTTATCAGCATGAGGTTGTCTGTCACTCTTTCTTGCCCTCTGGATCTAACACTGTTTCCTATGGACACCCAGCTCTGCAAGATGCAGTTAGAGAGCTttggcTATACCACGAAGGATCTGGTGTTTATGTGGCAGTCGGGAGACCCTGTTCAGATGGATGAGATTGCTTTGCCACAGTTTGATGTAAAGCAAGAGGACATTGAGTATGGAAATTGCACAAAGTTCTACCCGGGAACAGGTTATTATACTTGTGTGGAAGTCATCTTCACTCTCAGGAGGCAAGTGGGCTTTTATATGATGGGTGTTTATGCTCCCACCCTGCTGATTGTCGTCCTATCATGGCTGTCCTTCTGGATCAACCCAGACGCCAGTGCAGCTCGAGTCCCCTTAGGTATTCTGTCAGTTCTGTCACTGTCATCCGAGTCTATGTCTCTGGCATCTGAGCTTCCTAAGGTCTCCTATGTGAAAGCCATTGATATCTGGATGATAGCCTGTTTGCTGTTTGGTTTTGCCTCTCTTGTGGAGTACGCTGTGGTTCAGGTGATGCTGAACAGTCCCAAGCGCATTGAGGCAGAGAAGGTAAAGATGGCTCagaaagagaaagcaagagaaaaagagaacaaaacacCAGCTAAAACTAACAGTGCCAATGGCACCGGTGGGACACCTATACATGTCAGCACACTACAGGTTGTGGAAAACCGCTGTAAGAAGGTGTGTACTTCAAAATCTGATCTGCGCTCAAACGATTTCAGTATTGTCGGTTCTCTCCCACGAGATTTCGAACTCTCAAACTTCGACTGTTACGGCAAGCCTATTGAGGTCACAGATGCTGCCGGCAAATCACAGAACAAGAACAACAAGAAGCCGGCACCTCCAAAACCCGTCATCCCGTCTGCTGCTAAACAGATTGATCTCTATGCTCGAGCTCTGTTCCCTTTCACCTTCCttttctttaatgttatttactgGTCTGTCTACCTGTGACCATGACagagtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgcttttacGTTGATGAGGGTGATAATCAAGCATGAACAAAGTGTCAAAATGTTCATCATTTTCATTCTTTAATGTCTGTTACTTTGGTCTGCCAGCATAGTCCTGCTTATTTGTATCTCTCCTTATAAGTCGCTTTTTTGAAATGTGTAGCTTTAATACGAGCAAACTTTGCAGCATGACTTTACAGTGTGTTCAGCCATGTTTGGCCAAAGTGCTAGATAGTGATTCACTCCATGATGTTCCATGCCAAAACAACcataaatgtcttttgtttatAAACTCAGGCAAAACAATTGCTTATGGCAAGAAAGACTGTATCAGATCTTGACACAGACAGCATGCCGTATTCATGATGGGCTTATTGCATATGAGTCTGTAATAACAAGGGATGTAACTGCTGTTATTGAGCCATACAATAAAGATCCTTCATCAGCTACATTCTGATTTCTCCATCTTATCAAATGTATAcgattttactattttttttatattattttagtcaaAATCTGCCATTGATATGCTTCATGTCACTGTAGTACTTCCATACTAATTTACAACTTCTTCCCTTTTGAACATCCAATGActcttttttgcattgtttatattgcata
>XM_043238059.1
CATGCCCTCATTTAGTTCTGTGGGCTCAGTGTAAATCTGTTAAGAGAGACGGCTGTGATTTAATGTGACACAAAGGACGAATCGAGGTGAGGAGGAGCTGTTTCCAAAACCACTAACGTCTCGTGAATTCTTAAGCCTCTCTCGCGTAGTACACTCAGGGATCGCGGCTTTCTTTAATTCAAAACGCTTTCATTTGTTCAGCGCTTGATTTCGCACAAGACCGGTCCTTTACATCTCCCGAGTCACTTAATGCTAGGCTGTAGTCGCGCAGTTAGGTTTCGTAAGTTAAACCCAGGCGGAGAAAGTGACGCCGGTGCGGGACAGCGCGTGCTTCATCGCGCGAGagcacagcagcagcagcagcagcagcctcaCTGCAGCGGGACAGGTGCATCCACGCGCAATCCGTCACACACACCGAAACTGAGCCCGAGCGTGGATGTGCATGCAGTGACAGACATGTCGGTTGGCTGGAAGCGTGCTTGAGCGGGGGGACGCTAACATCAGCTGTGTTTTCTTCATGAGGTGTGCAGTCATGGTTCTCAAAGGGCTGAtcttgttgttgctgctggtaCAGTTCTCTGCAGAGAGCACTGCCAAAGAAGGAGGCAAACCCAAGAAGGGAAAAAAGGGCAAGCAAGTCATCTGTCCCTCTCAGTTATCAGCAGAGGACTTGGACAGAGTCCCAGCCAACTCAACCAGCAACATACTGAACCGTTTGTTGATGACATATGATTCACGAATACGACCAAACTTCAAAGGCATCCCAGTGGAGGATAAGGTGAACATCTTCATCAACAGCTTTGGGTCGATCCAGGAGACCACAatgGATTACCGTGTTAATATATTCCTGCGCCAGCGCTGGAATGACCCACGGCTACGGTTACCAACTGATTTTAAGTCAGATGCATTGACCGTTGATCCAAAAATGTTCCAGTGCCTGTGGAAACCAGATCTGTTTTTCGccaatgaaaaaaatgctaattttcaCGACGTTACACAGGAAAACATACTCTTGTTCATTTTCCGCAATGGAGATGTCCTTATCAGCATGAGGTTGTCTGTCACTCTTTCTTGCCCTCTGGATCTAACACTGTTTCCTATGGACACCCAGCTCTGCAAGATGCAGTTAGAGAGCTttggcTATACCACGAAGGATCTGGTGTTTATGTGGCAGTCGGGAGACCCTGTTCAGATGGATGAGATTGCTTTGCCACAGTTTGATGTAAAGCAAGAGGACATTGAGTATGGAAATTGCACAAAGTTCTACCCGGGAACAGGTTATTATACTTGTGTGGAAGTCATCTTCACTCTCAGGAGGCAAGTGGGCTTTTATATGATGGGTGTTTATGCTCCCACCCTGCTGATTGTCGTCCTATCATGGCTGTCCTTCTGGATCAACCCAGACGCCAGTGCAGCTCGAGTCCCCTTAGGCTCCACCTCTCCTTCATTCCTCTCTCTCATTTGTTCATCTGTCCATTCCAGGGCTGGCTGTTACTCCCAGGTCAGTTTTAACATGTTGGCTTAAGTTCAGGGGACAGTA

Function

symbol description
glrba Predicted to enable neurotransmitter receptor activity. Predicted to contribute to extracellularly glycine-gated chloride channel activity and glycine binding activity. Predicted to be involved in several processes, including chloride transmembrane transport; glycinergic synaptic transmission; and neuropeptide signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in hindbrain and spinal cord. Human ortholog(s) of this gene implicated in hyperekplexia 2. Orthologous to human GLRB (glycine receptor beta).

NR:

description
PREDICTED: glycine receptor subunit beta-like

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0034613 cellular protein localization biological_process
GO:0006821 chloride transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016934 extracellularly glycine-gated chloride channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238057.1 True 2717 mRNA 0.45 11 12368875 12389712
XM_043238059.1 False 1543 mRNA 0.49 9 12373818 12389717

Neighbor

gene id symbol gene type direction distance location
tmem144a tmem144a,LOC107656881,LOC107548314,LOC107745069,LOC108443989 coding downstream 51684 12312334 ~ 12317191 (-)
npy1r npy1r,LOC107591578,LOC107548312,LOC107656908,LOC107702283 coding downstream 60166 12292229 ~ 12308709 (-)
rapgef2a LOC107745058,LOC107548350,LOC107655945 coding downstream 87047 12248495 ~ 12281828 (-)
klhl2 klhl2,LOC107745059,LOC107655955,LOC107702385,LOC107591556 coding downstream 121970 12236205 ~ 12246905 (-)
cpe NA coding downstream 143793 12211436 ~ 12225082 (-)
wdr19 wdr19,LOC107591558,LOC107750430 coding upstream 1227 12390944 ~ 12406555 (-)
ncapd3 ncapd3,LOC107655906,LOC107709432,LOC107750432,LOC107702392 coding upstream 17652 12407369 ~ 12419280 (-)
LOC122342838 NA coding upstream 40013 12429730 ~ 12434898 (-)
LOC122342847 NA coding upstream 48105 12437822 ~ 12440445 (-)
adamtsl7 LOC107709448,LOC107750434,LOC107702297,LOC107570220 coding upstream 87801 12477518 ~ 12494325 (-)
G2829 NA non-coding downstream 32116 12335352 ~ 12336759 (-)
G2826 NA non-coding downstream 78769 12289829 ~ 12290106 (-)
G2750 NA non-coding downstream 218159 12142906 ~ 12150716 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding downstream 439879 11927551 ~ 11928996 (-)
G2690 NA non-coding downstream 458865 11849622 ~ 11910010 (-)
G2837 NA non-coding upstream 36496 12426213 ~ 12442443 (-)
LOC122348535 ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581 non-coding upstream 37450 12427167 ~ 12443883 (-)
G2839 NA non-coding upstream 46200 12435917 ~ 12441497 (-)
G2841 NA non-coding upstream 64514 12454231 ~ 12454769 (-)
G2842 NA non-coding upstream 65637 12455354 ~ 12455572 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 2767 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 251492 12097910 ~ 12117383 (-)
apela NA other downstream 580209 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 788158 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 856042 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 514482 12904199 ~ 12926482 (-)
smim18 NA other upstream 579376 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 764769 13154486 ~ 13159444 (-)
G3072 NA other upstream 901579 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 1439746 13829463 ~ 13842664 (-)

Expression


Co-expression Network