zgc:136908 (zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411)


Basic Information

Item Value
gene id zgc:136908
gene name zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27068674 ~ 27076809 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238100.1
GCGATTGATAAACACTCGCTGTTTGTGTGCATATGCGTGCAACTTGGGTTGTTGTGTCAGAATCTTATTTATATGCGAGGGGATGGGTTTCAGACGTCCAGGGAGTAGCGCGGGCtgccacacaaacacattttctagGCATGGAGCCTGCAGTCAGGGACAGCGTCACACTTTGTACAGCTCTGCAATGAACTAAGGACTACAGACCAGACCTGGACTACAAACGTCTGACCTCTAGGATAAGGATAGGCTGATTTCTGATCATCTCTGGCCCAGAACTGGctcttttcttcagttaaacgtTGATCTGCAATGCCTGCCTCCGGAGCTTCAGATCCAAAATCAGAGGACTTCTCCACTGCTATTCTGAAGCAGAAGATTCGGCCGAATCGACTCGTCGTGGACGAAGCCAACAATGAGGACAACAGCATTGTGTGCTTGTCACAGGTTAAAATGGAGGAGCTGCAGTTGTTTCGGGGAGACACGGTGGTGTTACGCGGCCGGAAGCGGAGGCAGACCGTCTGCATCGTTCTCACGGACGACACGTGCGGGAACGAGCGCGTGCGCATGAACAGGGTCATCCGCAACAACCTGAGAGTGCGTCTCGGTGATGTCATCAGTATCCATGCTTGTCCAGATGTGAAATATGGGAAGCGCATCCATGTTCTACCTATTGATGACACTATCGAGGGGCTAACGGGCAACTTGTTCGAGGTTTTTCTAAAGCCGTACTTCCTGGAGGCCTACCGACCTGTTCACAAAGGTGATATTTTCCTGGTCAGAGGAGGCATGCGAGCAGTGGAGTTTAAAGTAGTAGAAACAGACCCCACCCCTCACTGCATTGTTGCCCCGGATACCATCATCCACTGTGAGGGAGAACCAATCAAACGAGAGGACGAGGAGGAGAACCTGAACGACATCGGGTACGATGACATCGGCGGTTGTCGTAAACAGCTGGCTCAGATTAAAGAGATGGTGGAGCTGCCTCTCAGGCACCCCGGCCTGTTCAAAGCCATCGGAGTGAAGCCTCCGAGAGGAATTCTGCTGTACGGTCCTCCCGGTACGGGCAAGACGCTGGTGGCTCGTGCTGTTGCTAATGAGACGGGAGCTTTCTTCTTCCTCATCAATGGTCCTGAAATCATGAGTAAACTGGCAGGAGAGTCTGAGAGCAACCTGAGAAAAGCTTTCGAGGAGGCAGAAAAAAACGCCCCTGCTATTATCTTCATCGATGAGCTGGATGCAATCGCTCCGAAGCGAGAGAAGACTCACGGTGAAGTTGAGCGGAGGATCGTCTCTCAGCTGCTCACCCTGATGGATGGCCTGAAGCAACGGGTTCATGTTGTCGTTATGGCAGCCACAAACAGGCCCAACAGTGTGGATCCCGCACTCCGGCGTTTTGGTCGTTTTGATCGAGAGATTGACATCGGCATCCCCGATTCCACCGGCAGGCTGGAAATTTTACAGATTCACACCAAGAACATGAAACTATCAGACGACGTGGACCTGGAACGGATCTCCACTGAAACGCACGGGCATGTGGGAGCAGATTTGGCCGCCCTGTGTTCAGAAGCAGCGCTGCAGGCCATTCGCAAAAAGATGACCCTAATTGATCTGGAGGACGACAGCATCGATGCAGACCTTCTCAACTCAATGGCCGTCACCATGGATGACTTCAAGTGGGCTCTGAGTCAGAGTAACCCATCTGCTCTGAGGGAGACGGTGGCCGAGGTTCCACAGGTAAACTGGGAGGACATCGGAGGACTCGACGAGGTGAAGCGAGAATTACAGGAGCTCGTCCAGTATCCAGTGGAGTATCCTGACAAGTTTCTCAAATTTGGAATGACTCCATCTCGAGGGGTCCTGTTCTATGGTCCGCCCGGATGTGGCAAAACCCTACTAGCCAAAGCCATCGCCAATGAGTGCCAGGCTAACTTCGTGTCCATCAaagGCCCAGAGCTGCTCACCATGTGGTTTGGTGAATCAGAGGCAAATGTCAGAGATGTGTTTGATAAGGCACGCCAGGCAGCCCCGTGCATCCTCTTCTTCGACGAGCTGGACTCCATTGCTAAAGCCCGAGGTGGCGGGGCCGGAGACGCGGGAGGCGCAGCCGACAGAGTCATCAACCAGATCTTGACAGAAATGGACGGAATGACCAATAAGAAAAACGTTTTTATCATTGGTGCCACCAACAGGCCTGATATCATCGATCCTGCAATCCTGAGGCCCGGTCGCTTGGATCAATTGATTTATATCCCTCTACCTGACATGCCCTCCCGCACTGCCATCCTGCGCGCCAACCTCCGCAAGTCCCCCGTCGCCAAGgACGTAGACCTGGCATATCTGTCCCGGATAACAGAGGGATTCTCGGGAGCAGACCTGACTGAGATCTGTCAGAGGGCCTGTAAGCTTGCTATAAGAGAAGCTATAGAGGCAGAGATCCGTGCTGAGAGACAGCGGCAAGCCAGGAAAGAGACTGCTATGGATGACGATTATGACCCGGTGCCTGAGATCAGGAAGGATCATTTTGAGGAAGCCATGAGGTTTGCTCGCCGGTCGGTCAGTGACAACGACATACGGAAGTATGAGATGTTTGCTCAGACTCTCCAGCAAAGCCGTGGATTTGGGAACTTCAGGTTTCCTACAGCGCCTCAGTCAAGCGGAGGTCAGGGGTCAGGCCAAGGCTCTGGGGGTCACTTCAGAGAAGACGGAGATGATGATCTCTATCAGTGATCTTCAAGCAGCCCAACGCCTGCTGTGTGTGACAGTGACAGTATCTGCACATAAtcattattagtaataattcgTTTTTAATCtctaaattttaattgaatgtctATTACTTTCatgttaaattttaaaatgatgttctTAAACGTGTTGGATGTGAAATGTGTGCCCGACAGTAATAAAGAATACGTGATTTCCCTGTTTGATTTCCAAA

Function

symbol description
zgc:136908 Predicted to enable ATP hydrolysis activity and polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ERAD pathway; autophagosome maturation; and mitotic spindle disassembly. Predicted to act upstream of or within autophagy. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease type 2Y; Paget's disease of bone; amyotrophic lateral sclerosis type 14; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 1; and inclusion body myositis. Orthologous to human VCP (valosin containing protein).

NR:

description
hypothetical protein cypCar_00010247

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238100.1 True 2941 mRNA 0.51 19 27068674 27076809

Neighbor

gene id symbol gene type direction distance location
ndufb7 ndufb7,LOC107573602,LOC107694602,LOC107703772,LOC107594238,LOC107714119 coding downstream 846 27066158 ~ 27067828 (-)
dnajb1b dnajb1b,LOC107573606,LOC107694604,LOC107747146,LOC107703757,LOC107594241 coding downstream 14079 27051727 ~ 27054595 (-)
LOC122344082 adgre9,LOC107752624,LOC107653768,LOC107558979 coding downstream 44374 27014477 ~ 27024300 (-)
LOC122349409 NA coding downstream 85087 26980305 ~ 26983587 (-)
si:ch211-286b5.4 LOC107709606,LOC107703789,LOC107594247 coding downstream 151059 26912603 ~ 26917615 (-)
samd1b samd1,LOC107580959,LOC107728687,LOC107599303,LOC108442215,LOC107661838 coding upstream 1690 27078499 ~ 27085950 (-)
prkacab prkacab,prkaca,LOC107694605,LOC107703755 coding upstream 10734 27087543 ~ 27097079 (-)
asf1bb asf1bb coding upstream 22097 27098906 ~ 27103260 (-)
LOC122344431 NA coding upstream 27080 27103889 ~ 27105348 (-)
LOC122344512 NA coding upstream 38672 27115481 ~ 27117602 (-)
G6933 adgre9,LOC107747176,LOC107694597,LOC107752408,LOC107752624 non-coding downstream 56303 27012123 ~ 27012371 (-)
G6929 NA non-coding downstream 59122 27009156 ~ 27009552 (-)
G6927 NA non-coding downstream 60687 27007503 ~ 27007987 (-)
G6926 NA non-coding downstream 61531 27006647 ~ 27007143 (-)
G6923 NA non-coding downstream 73975 26994438 ~ 26994699 (-)
G6981 NA non-coding upstream 220366 27297175 ~ 27297611 (-)
G6957 NA non-coding upstream 222617 27299426 ~ 27321856 (-)
G6982 NA non-coding upstream 224997 27301806 ~ 27302275 (-)
G6983 NA non-coding upstream 226291 27303100 ~ 27305694 (-)
G6956 NA non-coding upstream 236134 27312943 ~ 27314514 (-)
LOC122349164 NA other downstream 76092 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 148640 26917669 ~ 26920034 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 265720 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 545272 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 650777 26416859 ~ 26417897 (-)
LOC122344379 NA other upstream 119429 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 163515 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 298508 27375317 ~ 27385079 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 677973 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 815092 27891901 ~ 28076645 (-)

Expression


Co-expression Network