prkacab (prkacab,prkaca,LOC107694605,LOC107703755)


Basic Information

Item Value
gene id prkacab
gene name prkacab,prkaca,LOC107694605,LOC107703755
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27087543 ~ 27097079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238109.1
GAAGCGCGACAGGCGCGGCAGCATCCCTCCCTACCTGCGGCTCTCCTTAGCGCCTGACAGGCCCGGAGTCATGGGCAACACGCCGGCCGCCAAACGGGGCAACGAGATGGAAAGCGTCAAAGAGTTTTTGGCCTTCGCCAGAGAAGATTTCCTCAGGAAGTGGGAGAATCCTGCACAGAACACGGCGTGTCTGGAGGACTTCGACCGGCTGAAGACTCTGGGCACCGGCTCATTCGGTCGCGTGATGCTGGTCAGACACCGAGAGACCGGGCAGCACTACGCCATGAAGATCCTCAACAAGCAGAAGGTGGTGAAGCTGAAGCAGATCGAGCACACTCTGAACGAGAAGAGGATACTGCAGGCCGTCAGCTTCCCCTTCTTGGTGCGGCTGGAGTACTCCTTCAAGGACAACACTAATCTCTACATGGTGATGCAGTACGTTCAGGGAGGAGAGATGTTCTCACACCTGCGGAGAATCGGCAGATTCAGTGAACCCCATGCACGGTTTTATGCTTCACAAATAGTTTTGACATTTGAATATCTGCATGCCCTTGACCTGATCTACAGAGACCTTAAACCAGAGAACCTCCTCATCGATCAGCAGGGCTATATACAGGTGACAGACTTCGGCTTCGCCAAGCGGGTCAAGGGTCGCACGTGGACATTGTGCGGCACCCCGGAGTACCTGGCCCCGGAGATCATCCTCAGCAAGGGTTATAATAAGGCCGTGGACTGGTGGGCTCTGGGTGTGCTGATGTACGAGATGGCCGCCGGTTATCCTCCGTTCTTTGCCGATCAGCCCATTCAGATCTACGAAAAGATTGTCTCAGGAAAGGTACGCTTCCCGTCGCACTTCAGCTCCGACCTGAAGGACCTGTTGAGAAACCTGCTGCAGGTGGATCTCACCAAGCGCTACGGGAACCTTAAAAACGGAGTTAACGATATCAAAGGACACAAGTGGTTCTCCACTACTGACTGGATAGCCATTTACCAGCGGAGGGTGGAGGCCCCGTTTGTGCCTAAATGCAGAGGTCCCGGGGACACCAGCAACTTCGACGACTACGAGGAGGAAGAGATCCGTGTGTCCTTCACGGAGAAGTGTGCGAAAGAATTTGCTGAGTTCTAAGCGGAATAAGGGATAGatatcagagagagagagagagagagagagagagagggatacaggtggagagagagaacgagaaaaAGTGCATGAATCTTAAAGCGATCCTTCCTCCTGTTAAACAGCAGAGAAACCAGCGGAAGAGAGCAGAGAAGACCTCCAGGGATAAACAGTGAGGCCTTTATCATCTCCTCtattttaatcatgtttgtaattttctcctttttttttttttttcttttttttcctttttttcaatcTCTGTTCACGTGATATTAATCGCGCTGGATCCGGCGGGGTGTGTGTGTTGGCCTGCGGACAGACGAAGACGGTCGGGGATCATCTCTAAACCTCGAGCAGTTCCCGCTGAAGAGCAGGTCCTCCACTGGGTCGCCATAACAACCGTGCAGAAAAATAAgggggggg

Function

symbol description
prkacab Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be involved in protein kinase A signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; fin bud; optic cup; pronephric duct; and retinal neural layer. Human ortholog(s) of this gene implicated in adrenal cortical adenoma; congestive heart failure; platelet-type bleeding disorder 19; and primary pigmented nodular adrenocortical disease. Orthologous to several human genes including PRKACA (protein kinase cAMP-activated catalytic subunit alpha).
prkaca Enables enzyme binding activity; protein kinase A regulatory subunit binding activity; and protein kinase activity. Involved in several processes, including cellular response to glucose stimulus; regulation of bicellular tight junction assembly; and regulation of osteoblast differentiation. Located in several cellular components, including centrosome; nuclear speck; and sperm midpiece. Part of cAMP-dependent protein kinase complex and nucleotide-activated protein kinase complex. Colocalizes with axoneme. Implicated in adrenal cortical adenoma; congestive heart failure; and primary pigmented nodular adrenocortical disease.

NR:

description
cAMP-dependent protein kinase catalytic subunit alpha

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238109.1 True 1549 mRNA 0.52 10 27087543 27097079

Neighbor

gene id symbol gene type direction distance location
samd1b samd1,LOC107580959,LOC107728687,LOC107599303,LOC108442215,LOC107661838 coding downstream 1593 27078499 ~ 27085950 (-)
zgc:136908 zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411 coding downstream 10734 27068674 ~ 27076809 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602,LOC107703772,LOC107594238,LOC107714119 coding downstream 19715 27066158 ~ 27067828 (-)
dnajb1b dnajb1b,LOC107573606,LOC107694604,LOC107747146,LOC107703757,LOC107594241 coding downstream 32948 27051727 ~ 27054595 (-)
LOC122344082 adgre9,LOC107752624,LOC107653768,LOC107558979 coding downstream 63243 27014477 ~ 27024300 (-)
asf1bb asf1bb coding upstream 1827 27098906 ~ 27103260 (-)
LOC122344431 NA coding upstream 6810 27103889 ~ 27105348 (-)
LOC122344512 NA coding upstream 18402 27115481 ~ 27117602 (-)
LOC122344544 NA coding upstream 26253 27123332 ~ 27124722 (-)
LOC122344560 LOC107714107,LOC107698215,LOC107752624,LOC107653768,LOC107703693,LOC107558979 coding upstream 55066 27152145 ~ 27156249 (-)
G6933 adgre9,LOC107747176,LOC107694597,LOC107752408,LOC107752624 non-coding downstream 75172 27012123 ~ 27012371 (-)
G6929 NA non-coding downstream 77991 27009156 ~ 27009552 (-)
G6927 NA non-coding downstream 79556 27007503 ~ 27007987 (-)
G6926 NA non-coding downstream 80400 27006647 ~ 27007143 (-)
G6923 NA non-coding downstream 92844 26994438 ~ 26994699 (-)
G6981 NA non-coding upstream 200096 27297175 ~ 27297611 (-)
G6957 NA non-coding upstream 202347 27299426 ~ 27321856 (-)
G6982 NA non-coding upstream 204727 27301806 ~ 27302275 (-)
G6983 NA non-coding upstream 206021 27303100 ~ 27305694 (-)
G6956 NA non-coding upstream 215864 27312943 ~ 27314514 (-)
LOC122349164 NA other downstream 94961 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 167509 26917669 ~ 26920034 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 284589 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 564141 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 669646 26416859 ~ 26417897 (-)
LOC122344379 NA other upstream 99159 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 143245 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 278238 27375317 ~ 27385079 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 657703 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 794822 27891901 ~ 28076645 (-)

Expression


Co-expression Network