gpank1 (gpank1,LOC107682883)


Basic Information

Item Value
gene id gpank1
gene name gpank1,LOC107682883
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14807902 ~ 14812747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238110.1
CAAACCTCACAAGAAAAAGAGCAACACCATGTTTACGTAGTTagcctttattttattgtttgtcttttttttgggaTCCTTGTAAGAAGGTATCGCTCCCAAATTAACCTAAAATGagaaTCTCATGGCCACAAGCAGCTTCTGCAGCATCTCTCAGGAATTCCCTTATCAGCAGTAGCAGATTTTGTTAAAGATGAGCCGTCCAGTCTACTTCACCAGAGCTAAAGAAGAGGAAAACCTCTggatagatagaaagagagaagacAAGCAAACAATTACTGGGGAGGAGGCCAGAGACTTTTATCAGAGCCTGCTACAAGAGACGGATGGAGAAAAGCCAAAAGGGGGAGAAGCAGCAACCACAAGAAGAGTGAGAAGAAGAGCAGGTCccaaaagaagaagagaagcacGCCGTCCAGAAGCTGCTCATGTTGAACCGGTTAACACTTCAGAGCGTGATGGATACAAACTCCTCCGATGTGCCCAGGAGGGAAACATTCGGGCCCTAAAGGACCTCTTGCGGCGTGGCATTGATGTCAACTTCCGTGATGATTTTTACTGGACAGGTGTGATGTGTGCGAGTAAGGCAGGACAAACGGACGCTGTTCGGCTGCTCCTGCAACACGGCGCTGCTTGGGTGGGAGTTGTGGACAAACAGGGCAGAGATGCTCGGGATCTGGCCCTGCAGGCAGGTCACCAGGATGTAGTGAGAGAACTGGAGCAGTTCAGCGTGTCAGAGATCACAAACACGCCAACTACAAACAGAGAGAGCGTTCATCCTCAGTGGTGTAATTTGTGTGCTGTGCATTACACAGACAGCACTGAAACACACAACAGGTCCACACTGCATCAGTTCAGCGAGCTCCGCCCCCCAACCACCCCTCAATACTGCCTGCCCTCTTCCAGCAACAGCTACAAAATGATGCTCCGTTTGGGGTGGGACCCCGCTTCTGGTCTCGGACCCGCCCACTCCGGACGCAAAAACCCAGTAAGCACTGTACTAAAGAGAGACCAGGCCGGCCTGGGGTATGGAGCTAGCCCACAGTCGAAAGTCACACACTTCCAGGCCAAAGATCCTCAGGCAGTGCAACACGTACGTAAACAGAAAAGACTGGAGAAGAGACAGGAGAAAGGCACAACCCTCTGTGCTAAAGAACTTAAGAGGAAAGAAGAACGAGACAAGAAATGGGAAAGAGACTACCGGGCATCATTTAACTTTGACTTCTGACCTACTGTGCCTTTGTTCAAAATTCTCTTGTCTTTCTCTAAACCAGTGTCAAAGGGTTAAACTGATTGTGTTTTAAAGGGTGGAGGGGCACAAATTCAACATGGGTTTTTTGTGACATCTATAAACCTAACAGGGAGGAATGTGAAACTAACAGGGTTAAAATTCtgatataattgtatttattgtatgctGCCAATGAATCTACCTCCATAAATATTTTGAGTGGTAATATAAGTACAATTGTATTGTAGTTAATGAACTAGAAAatcgatgctgaaaattcagatttaccaacagaaataaattaaaataagctattttaaattgcaaaaatatttcacagtattactatTTTTGATGTATTTGCTGTAACTTTAAAAATCGTGCTGATCTAAAACTTCTGAGCGGCgatatgtagaaaaaaaaaacaaaaaacaaatatttaatcttGTTTTGTTGGGTATCATAAGCACAGtctaaaataagttaaatgaaCTTAACTTAATTAATGTCCCTCCTCTAAAAGGAAATCTGGattttagttattaataaacaatatgttTTGAAACAATGTTATACAGGTGCATTACAGATGGGAAATAATGCAATGACTGAAAGCTCATTTGCTGTTAGAACCTGTTAACACTGGTCTTCCACCCTGTTAGGCCGTTTCACTCTGTTAAGCTCTCTTCCACCCTGTTAGAATtcaagaaaatatttgaaaacaacattaaatgttGGCCATACATTTGTCTTATTTTGTGAGGTGAGGAGCATTAACagcatatatatgtttttgagcaactttgttatattatttaccATCCTGTTGGCAAAGATGTGCACACAAGAgtacatgttttaataaattttttttattaataatttttgttgCAAGAATAAAAAATACCATTATGGCATAAGGGACATATACTGTCTTATTATTGTTTAACATTTACGTTATTAAAATATGCACCTAACAGGGTGGAATACATTCACAGCGATTGCCGGAATAATCTACccataattattatgttttaagtCACTGAACTTGGCCAATATGTGCTCCATATAGTTAAACATCACTGTTTTGGTAGAATGCTAAAAACACTTGTAACCTGTTTTATCAAACCTGTGAATCAAAAAAGCATTGGTTACCAGGAATGACCCATAAGTATGATAAAGATATTCAATGTTTAATTCCTTCCGTGTTGTTGCACTGTAGGAATAGTGGTTTAAGCAACGGAGGTGTGTTGAACACAGCAGGCTTTTAAGAAGAAGCAATAGAAAAAGTAATTTAGCAACACCTCTGCTTTAACCCCGTAGGTGCTTGCCTGCGCTATTAACCAAGATATAAACTTCAGATTTTCAATA
>XM_043238117.1
CAACAAACCTCACAAGAAAAAGAGCAACACCATGTTTACGTAGTTagcctttattttattgtttgtcttttttttgggaTCCTTGTAAGAAGTCTCATGGCCACAAGCAGCTTCTGCAGCATCTCTCAGGAATTCCCTTATCAGCAGTAGCAGATTTTGTTAAAGATGAGCCGTCCAGTCTACTTCACCAGAGCTAAAGAAGAGGAAAACCTCTggatagatagaaagagagaagacAAGCAAACAATTACTGGGGAGGAGGCCAGAGACTTTTATCAGAGCCTGCTACAAGAGACGGATGGAGAAAAGCCAAAAGGGGGAGAAGCAGCAACCACAAGAAGAGTGAGAAGAAGAGCAGGTCccaaaagaagaagagaagcacGCCGTCCAGAAGCTGCTCATGTTGAACCGGTTAACACTTCAGAGCGTGATGGATACAAACTCCTCCGATGTGCCCAGGAGGGAAACATTCGGGCCCTAAAGGACCTCTTGCGGCGTGGCATTGATGTCAACTTCCGTGATGATTTTTACTGGACAGGTGTGATGTGTGCGAGTAAGGCAGGACAAACGGACGCTGTTCGGCTGCTCCTGCAACACGGCGCTGCTTGGGTGGGAGTTGTGGACAAACAGGGCAGAGATGCTCGGGATCTGGCCCTGCAGGCAGGTCACCAGGATGTAGTGAGAGAACTGGAGCAGTTCAGCGTGTCAGAGATCACAAACACGCCAACTACAAACAGAGAGAGCGTTCATCCTCAGTGGTGTAATTTGTGTGCTGTGCATTACACAGACAGCACTGAAACACACAACAGGTCCACACTGCATCAGTTCAGCGAGCTCCGCCCCCCAACCACCCCTCAATACTGCCTGCCCTCTTCCAGCAACAGCTACAAAATGATGCTCCGTTTGGGGTGGGACCCCGCTTCTGGTCTCGGACCCGCCCACTCCGGACGCAAAAACCCAGTAAGCACTGTACTAAAGAGAGACCAGGCCGGCCTGGGGTATGGAGCTAGCCCACAGTCGAAAGTCACACACTTCCAGGCCAAAGATCCTCAGGCAGTGCAACACGTACGTAAACAGAAAAGACTGGAGAAGAGACAGGAGAAAGGCACAACCCTCTGTGCTAAAGAACTTAAGAGGAAAGAAGAACGAGACAAGAAATGGGAAAGAGACTACCGGGCATCATTTAACTTTGACTTCTGACCTACTGTGCCTTTGTTCAAAATTCTCTTGTCTTTCTCTAAACCAGTGTCAAAGGGTTAAACTGATTGTGTTTTAAAGGGTGGAGGGGCACAAATTCAACATGGGTTTTTTGTGACATCTATAAACCTAACAGGGAGGAATGTGAAACTAACAGGGTTAAAATTCtgatataattgtatttattgtatgctGCCAATGAATCTACCTCCATAAATATTTTGAGTGGTAATATAAGTACAATTGTATTGTAGTTAATGAACTAGAAAatcgatgctgaaaattcagatttaccaacagaaataaattaaaataagctattttaaattgcaaaaatatttcacagtattactatTTTTGATGTATTTGCTGTAACTTTAAAAATCGTGCTGATCTAAAACTTCTGAGCGGCgatatgtagaaaaaaaaaacaaaaaacaaatatttaatcttGTTTTGTTGGGTATCATAAGCACAGtctaaaataagttaaatgaaCTTAACTTAATTAATGTCCCTCCTCTAAAAGGAAATCTGGattttagttattaataaacaatatgttTTGAAACAATGTTATACAGGTGCATTACAGATGGGAAATAATGCAATGACTGAAAGCTCATTTGCTGTTAGAACCTGTTAACACTGGTCTTCCACCCTGTTAGGCCGTTTCACTCTGTTAAGCTCTCTTCCACCCTGTTAGAATtcaagaaaatatttgaaaacaacattaaatgttGGCCATACATTTGTCTTATTTTGTGAGGTGAGGAGCATTAACagcatatatatgtttttgagcaactttgttatattatttaccATCCTGTTGGCAAAGATGTGCACACAAGAgtacatgttttaataaattttttttattaataatttttgttgCAAGAATAAAAAATACCATTATGGCATAAGGGACATATACTGTCTTATTATTGTTTAACATTTACGTTATTAAAATATGCACCTAACAGGGTGGAATACATTCACAGCGATTGCCGGAATAATCTACccataattattatgttttaagtCACTGAACTTGGCCAATATGTGCTCCATATAGTTAAACATCACTGTTTTGGTAGAATGCTAAAAACACTTGTAACCTGTTTTATCAAACCTGTGAATCAAAAAAGCATTGGTTACCAGGAATGACCCATAAGTATGATAAAGATATTCAATGTTTAATTCCTTCCGTGTTGTTGCACTGTAGGAATAGTGGTTTAAGCAACGGAGGTGTGTTGAACACAGCAGGCTTTTAAGAAGAAGCAATAGAAAAAGTAATTTAGCAACACCTCTGCTTTAACCCCGTAGGTGCTTGCCTGCGCTATTAACCAAGATATAAACTTCAGATTTTCAATA

Function

symbol description
gpank1 Predicted to enable nucleic acid binding activity. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1).

NR:

description
PREDICTED: G patch domain and ankyrin repeat-containing protein 1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238110.1 True 2602 mRNA 0.40 5 14807902 14812744
XM_043238117.1 False 2574 mRNA 0.40 5 14807902 14812747

Neighbor

gene id symbol gene type direction distance location
si:ch211-145b13.6 NA coding downstream 1655 14804654 ~ 14806247 (-)
kcnip4b si:ch211-145b13.5,LOC107757593,LOC107695828,LOC107700280,LOC107714629 coding downstream 4048 14796045 ~ 14803854 (-)
synpo2b LOC107572695,LOC107695836 coding downstream 14536 14786399 ~ 14793366 (-)
LOC122347500 myoz2,myoz2b,LOC107695402,LOC107700320 coding downstream 23097 14779201 ~ 14784805 (-)
LOC122342957 NA coding downstream 64226 14742645 ~ 14743676 (-)
pdcd4a pdcd4a,LOC107695387,LOC107595047,LOC107714648,LOC107757625,LOC107700321 coding upstream 4119 14816866 ~ 14828026 (-)
cdkn2a/b LOC107595098,LOC107714625,LOC107695349 coding upstream 50097 14862844 ~ 14865133 (-)
ppa2 ppa2,LOC107714645,LOC107595053,LOC107695313 coding upstream 146418 14959165 ~ 14963133 (-)
ints12 ints12,LOC107714643,LOC107695298,LOC107595100 coding upstream 163616 14976363 ~ 14979418 (-)
anp32b anp32b,LOC107595056 coding upstream 211898 15024645 ~ 15029358 (-)
LOC122336348 usp53b,LOC107714652,LOC107572698,LOC107695415,LOC107598280,LOC107700316,LOC108442608 non-coding downstream 33982 14772740 ~ 14773920 (-)
LOC122336242 NA non-coding downstream 35172 14771467 ~ 14772730 (-)
G3495 pdcd4a,LOC107598278,LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 non-coding downstream 48877 14758120 ~ 14759025 (-)
G3493 NA non-coding downstream 57728 14749387 ~ 14750174 (-)
LOC122353106 NA non-coding downstream 65266 14742108 ~ 14742636 (-)
G3502 NA non-coding upstream 35278 14848025 ~ 14848576 (-)
G3546 NA non-coding upstream 188538 15001285 ~ 15004288 (-)
G3570 NA non-coding upstream 416589 15229336 ~ 15229753 (-)
G3572 bnc2,LOC107595060,LOC102789865 non-coding upstream 462137 15274884 ~ 15275311 (-)
G3577 bnc2,LOC107737409,LOC107737408,LOC107678088,LOC107595060 non-coding upstream 491241 15303988 ~ 15306245 (-)
G3491 gpank1 other downstream 58927 14746829 ~ 14748975 (-)
myoz2b myoz2,myoz2b,LOC107695402,LOC107700320 other downstream 93356 14686596 ~ 14714546 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other downstream 120042 14661474 ~ 14687860 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other downstream 912618 13881893 ~ 13895284 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other downstream 965238 13829463 ~ 13842664 (-)
cxxc4 cxxc4,LOC107695705 other upstream 85454 14898201 ~ 14918786 (-)
G3522 NA other upstream 112338 14925085 ~ 14925363 (-)
G3515 coro2a other upstream 207895 15020642 ~ 15029620 (-)
G3571 NA other upstream 417792 15230539 ~ 15230886 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 1256430 16069177 ~ 16073920 (-)

Expression


Co-expression Network