LOC122344431


Basic Information

Item Value
gene id LOC122344431
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27103889 ~ 27105348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238123.1
GAAGTGACTTCCtgtgtaggtttagggtttttGAAACATTAAGCTAAAGATCACAGCTCATCTGTGAAGACTGACACCCACACTGACTAATGGACATCGATACGGTTTACGAAAATGTTGGACAACCAGAAACATTTGGACAAAAACACAGGCAGACAGAAACAAAAGCTAAACACTGCAGAGGAAGTAGATGTTTGGTGTTGATCACAGCGAGTCTCGGGATCATTTGTGTTCTTCTGCTGGTCTTCATCGTTCTGCTGAACATCTCCATCACAGCAGAGAGAGACCTGATAAAGAGTTACAAGAACACGGTCGAAGAGCTCAATCAAACCATCAACGTCTTGCAGGACAATAACGCTGCTCTGCTCCAGAGGAAAGGTTGGTTTTTCATGTCCACCGAGGCGATGAACTGGTCTGACAGCAGACAGTACTGCAGGGATCGTGGAgctgatctgatcatcatcaaCACCGAAGAGAAGCAGAAATTCATCTCTTCGTTTACCGCGGACAGTGTGTGGATCGGTTTGTCCGACAGCGAGAAGGAGGGCACCATGAAATGGGTGGATAACTCTCCACTGAAACGAggGTTTTGGATCGAGGGTGAGCCAAACAACCTCGGAGGAGACGAAGACTGCGTCGCTCTATACCCCTGGGATCCTCTGAGCAGCTGGAACGACCTGTCCTGCTCGAGCACGGAAAAATGCATTTGCGAGAAATAGGGCTCGTCTAGTCATCTAGTCGTGCTGCTTCCTGTGTTGTCTCGTGGAATCGAATGTGTCCTTTCTGACCATGTCCTTATTTCAGCTGCTGTCGTGAATCTGGTTTGTTGGTCTGAAGAGTTGCTCGTCTCATATCTCATTAACTGTCTGGGAAACTGCTTTTGATCCGCGTCGCTTccctttttaataaaactgttgACTTGCGGTCTTTGCACAGCA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002263 cell activation involved in immune response biological_process
GO:0042113 B cell activation biological_process
GO:0016444 somatic cell DNA recombination biological_process
GO:0002285 lymphocyte activation involved in immune response biological_process
GO:0016445 somatic diversification of immunoglobulins biological_process
GO:0016447 somatic recombination of immunoglobulin gene segments biological_process
GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus biological_process
GO:0002312 B cell activation involved in immune response biological_process
GO:0045190 isotype switching biological_process
GO:0002366 leukocyte activation involved in immune response biological_process
GO:0002377 immunoglobulin production biological_process
GO:0046649 lymphocyte activation biological_process
GO:0002381 immunoglobulin production involved in immunoglobulin-mediated immune response biological_process
GO:0002440 production of molecular mediator of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0002200 somatic diversification of immune receptors biological_process
GO:0002204 somatic recombination of immunoglobulin genes involved in immune response biological_process
GO:0019724 B cell mediated immunity biological_process
GO:0002208 somatic diversification of immunoglobulins involved in immune response biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238123.1 True 938 mRNA 0.47 5 27103889 27105348

Neighbor

gene id symbol gene type direction distance location
asf1bb asf1bb coding downstream 629 27098906 ~ 27103260 (-)
prkacab prkacab,prkaca,LOC107694605,LOC107703755 coding downstream 6810 27087543 ~ 27097079 (-)
samd1b samd1,LOC107580959,LOC107728687,LOC107599303,LOC108442215,LOC107661838 coding downstream 17939 27078499 ~ 27085950 (-)
zgc:136908 zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411 coding downstream 27080 27068674 ~ 27076809 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602,LOC107703772,LOC107594238,LOC107714119 coding downstream 36061 27066158 ~ 27067828 (-)
LOC122344512 NA coding upstream 10133 27115481 ~ 27117602 (-)
LOC122344544 NA coding upstream 17984 27123332 ~ 27124722 (-)
LOC122344560 LOC107714107,LOC107698215,LOC107752624,LOC107653768,LOC107703693,LOC107558979 coding upstream 46797 27152145 ~ 27156249 (-)
LOC122344447 asf1bb,asf1b,LOC107747137,LOC107573603,LOC107703766,LOC107694608,LOC101069596 coding upstream 75379 27180727 ~ 27185902 (-)
LOC122344496 NA coding upstream 80871 27186219 ~ 27187729 (-)
G6949 NA non-coding downstream 12460 27064144 ~ 27091429 (-)
G6933 adgre9,LOC107747176,LOC107694597,LOC107752408,LOC107752624 non-coding downstream 91518 27012123 ~ 27012371 (-)
G6929 NA non-coding downstream 94337 27009156 ~ 27009552 (-)
G6927 NA non-coding downstream 95902 27007503 ~ 27007987 (-)
G6926 NA non-coding downstream 96746 27006647 ~ 27007143 (-)
G6981 NA non-coding upstream 191827 27297175 ~ 27297611 (-)
G6957 NA non-coding upstream 194078 27299426 ~ 27321856 (-)
G6982 NA non-coding upstream 196458 27301806 ~ 27302275 (-)
G6983 NA non-coding upstream 197752 27303100 ~ 27305694 (-)
G6956 NA non-coding upstream 207595 27312943 ~ 27314514 (-)
LOC122349164 NA other downstream 111307 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 183855 26917669 ~ 26920034 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 300935 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 580487 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 685992 26416859 ~ 26417897 (-)
LOC122344379 NA other upstream 90890 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 134976 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 269969 27375317 ~ 27385079 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 649434 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 786553 27891901 ~ 28076645 (-)

Expression


Co-expression Network