asf1bb (asf1bb)


Basic Information

Item Value
gene id asf1bb
gene name asf1bb
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27098906 ~ 27103260 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238126.1
gCAAATGTTGAAATCGAGTCAAGTTATATCTATATCAAGTTATCTGAATTAGATGGAAAGAGCATATGTGAAATGAAATACAGCATCAGTGGCATTAAGAAACAGCTGGAAGGCGTTTATACtctatatatacagaaatatacaaacaaaatggGTGTATCAAGAGATAATGGtaagaatatgaataaatttTAAGCAGAATAAGGAGCATTACAGCCTTAAAAGCACTCTTTATATTATGGGAAAACGCCAGACAGTAGATAGAAATgttgaaagcattttaaaatgtgcagagAAAAGAAGTTtggttgtttttaatgaaagaaactGTAGTGGAGAATGTAGCGTAAAGGAAATTCAGCACAGTAGGGGGCAGTAGTGCAACAAACCGGATGCTGTAAAACtccgaagaagaagaagacttCCTCCAGTCCTGCGGGAAGCAGCAGAGAGCCGGTCTATCGGGCTGAAGAAGACAAACATCGGCTCCAGAGCACTTGCTGCTGTCATTCAGTGTCTTCGCTGCACTTACAGACGGGTTTTTTTCCTCCTGGATCCAGCGGAAAGAACTCATCGGGATTCTTTTATTCGTCTGTGAAGCCTGCTCTAAACCCCGCGCTCTTCAGGACACCCCGGCAGTGAATAACATGGGTGTGCGCCGAGCATCCGATTAGTTCAGAAAGTACAAAGAGAGAAAACCCTGCGCTTCACCTACTTCGGCGGGAGATCGTTTTCTTCTACACGTCGGACCCCGGTTACACGCTTCCGCTGGGGTTTACCTCGGATTCGGAGCTGGACGGTTCCGCGCTCTTCCACAGACACAAGGCCGATTTCTGTCGCCCGAACCTCGCGAGCCACCATGGCTAAAGTGCAGGTGCTGAACGTGGCTGTTCTGGATAACCCCAGTCCTTTCGGAAACCCGTTTCAGTTCGAAATCACATTTGAATGCATGGAGGACCTGCCTGAAGATCTTTCATCTCGGTGGAAGATCATCTATGTGGGCTCTGCAGAGAGCGAGGAGTACGACCAGATCCTGGACTCGGTTCTGGTCGGCCCAGTTCCGCAGGAAGACATATCATTCgggtttgattgacaggcggatGCTCCAAACACGGGGCTGATCCCGAGAGCGACGCGGTGGGGCGTGACCGTGAGTGCTGATCACGTGCACCTATCGGGGCAGGAGTTCATTCGCGATCGGCTACTCGTGAACAACGAGTACCACGGACCCGAGCTGCGGGAGAACCCGCCGGTCAAACCCGACTACACACAGCTGCAGAGGAACATCTTGGCCTCTAACCGCGTGACCCGTTTCCACATCAACTGGGAAGCGGCGATGGACAAGATGGAGGATTCGGAGAATGTAGACCCGCCCCAATGCCATGCTCCGCCCTCCTCCATGCCCGGCAAAGCGCCCCTCGGACTCATGCCCGACAACTCTATGGACTGCTTATAAAGCGCGAACGCGACCGCAACCTCGCTCGTGAAGTAATAAATGTGttcttttgtatttatacacCTACAGTTGTCCCACACGTGCTCTTAGCGCTGAGATCGGGCGCGACAGCAGGGGCCGGACCTGCAGCACCAGCAGACGTGGACTGTtctcttctgtttttctgtgGTGCACATCACTAGTGAGGTGAATCCCATAAA

Function

symbol description
asf1bb Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).

NR:

description
PREDICTED: histone chaperone ASF1B

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238126.1 True 1656 mRNA 0.50 7 27098906 27103260

Neighbor

gene id symbol gene type direction distance location
prkacab prkacab,prkaca,LOC107694605,LOC107703755 coding downstream 1827 27087543 ~ 27097079 (-)
samd1b samd1,LOC107580959,LOC107728687,LOC107599303,LOC108442215,LOC107661838 coding downstream 12956 27078499 ~ 27085950 (-)
zgc:136908 zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411 coding downstream 22097 27068674 ~ 27076809 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602,LOC107703772,LOC107594238,LOC107714119 coding downstream 31078 27066158 ~ 27067828 (-)
dnajb1b dnajb1b,LOC107573606,LOC107694604,LOC107747146,LOC107703757,LOC107594241 coding downstream 44311 27051727 ~ 27054595 (-)
LOC122344431 NA coding upstream 629 27103889 ~ 27105348 (-)
LOC122344512 NA coding upstream 12221 27115481 ~ 27117602 (-)
LOC122344544 NA coding upstream 20072 27123332 ~ 27124722 (-)
LOC122344560 LOC107714107,LOC107698215,LOC107752624,LOC107653768,LOC107703693,LOC107558979 coding upstream 48885 27152145 ~ 27156249 (-)
LOC122344447 asf1bb,asf1b,LOC107747137,LOC107573603,LOC107703766,LOC107694608,LOC101069596 coding upstream 77467 27180727 ~ 27185902 (-)
G6949 NA non-coding downstream 7477 27064144 ~ 27091429 (-)
G6933 adgre9,LOC107747176,LOC107694597,LOC107752408,LOC107752624 non-coding downstream 86535 27012123 ~ 27012371 (-)
G6929 NA non-coding downstream 89354 27009156 ~ 27009552 (-)
G6927 NA non-coding downstream 90919 27007503 ~ 27007987 (-)
G6926 NA non-coding downstream 91763 27006647 ~ 27007143 (-)
G6981 NA non-coding upstream 193915 27297175 ~ 27297611 (-)
G6957 NA non-coding upstream 196166 27299426 ~ 27321856 (-)
G6982 NA non-coding upstream 198546 27301806 ~ 27302275 (-)
G6983 NA non-coding upstream 199840 27303100 ~ 27305694 (-)
G6956 NA non-coding upstream 209683 27312943 ~ 27314514 (-)
LOC122349164 NA other downstream 106324 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 178872 26917669 ~ 26920034 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 295952 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 575504 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 681009 26416859 ~ 26417897 (-)
LOC122344379 NA other upstream 92978 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 137064 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 272057 27375317 ~ 27385079 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 651522 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 788641 27891901 ~ 28076645 (-)

Expression


Co-expression Network