XLOC_006582 (CR550304.1)


Basic Information

Item Value
gene id XLOC_006582
gene name CR550304.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22778060 ~ 22784433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012718
gattgacagggtGAGTGCAGGAAGTTCTGTTGAGCTAAGACAGGTTTTCAGTGTGGGGGGGGCAGGGGCATTGGAGAAGACGCACTAAGTCGTGTGGGTGGTGTAAATCCAGTATGTGTGAGCCAGTAAGGCAGGCCagagctgtttttattttctgttgagaAGAGAGGGAGGCACAGAGACTTACAAATGAATAGGCTGTTTTTCTGAAGACTCTGAAGGAGGGAATATTCCACACTGCTGCAGTGTGGCGGATGGGAAGGGACGCTTGAGAGGGGAGTTGACAGGTGATCTTGAAGATAATGTTGAAGTCATTTATACTCTCTCTTGGGTGTGAAAGGAAACAAACTTCAAGAGAAAACACAATGACCAGCATCATTAATCAATTGCGGACAACAGGTGTTGTGCTATAAGACAGATCTTCAGGCTGCTATTTTGTCAGCCATGTCTCAGTCAGGTAAAATTCTCCACCTTTATGTAGAGGTGAGATCTGTTCCTGATGAAGAAGGAAAAGACCTGGGAGATGTGGAGAGAACAGATTCCCCTATGTTGGCAGCACCAGACATTATTCAGCAATCTCAGATTGTTGGCCCTAATGCCCCACATGGCCGGGTATCCCCACGTGGAGTCCTGCATAAAGGTGGAAGCAGCACCCAGAGCCTGGCCTCCTGTAAATCAACATCTAGACACTCTGTAAGTTTTCAGCTACATCCAGGTCTTGACTCTGACCAATCGACAACCCAGCACCAAAAAAACCTACCTTATGATGAGATAAGCCAGTTACTCTCTGTCCTCCAAACAGGAACCACTGGAAACAAATGTCACTTGGTGTGTTCTCCCTCTGAACGTGACTCCTTTGGTAGAGAACCTCACTTCTCAGGACGGTTTACCGCCCCTCCTACTCCTAGTGGAACTCGTAAGGTTTGCAGCCCAATAAAAATGAAGGGAGGAGATGAAGGGAGAAGATCTATTGCCACTTTTAGTTATATCGAAAAAGCTAAAATTAAATCTGTTGAGAGTCAGTATAGCTCTTTGTGCCAAAATGAGCCTCAgaatccttttaaaaaaaatatggagGATCGAGCAACTTCCCTTCACCTCAAGAAAAGGCTTAGTGACCCAGTGTGGTTTAATAGCTTTGAGTCTATGAACAACTGTAATTCAAAACAACTTAGTCAGGGTTTGGGGAACCCACATATAGGTAGCCCCAGCTTTAGACGGGCTACTCTAGATGTTGCCAGAGAAGCAACCCATAAAGCATTGGATGAATTTGGTTCCCCACAACTAAGGCAAAAACTGGCAGGCAACTGTCATGATAGAGGTCATGACATCAGGAAAGTAGAGCAACGTCGCTGTAGGTCTTGGTCTGGGTCACCAGTGATACCATCCAGTTCTAGGACTCTGCCTACTAAAGCAACAATCATGGACCATGAGAGGAACAGTTCATTTTATAGACTTCCTAGGAGCCCAGCTACAGATCAACTGTCACaccatgccaaacaagcttactTCACCATTTCAAATTCAACTGTTAACACTCAGGAGATCTCAAACCAAAGAGTGCAAGGGTCTAGGCTTCGCCCAAACTTACCATCTTGTAAGCCTACAGCTATTCAACATGAACTACCAGCTAAGATTGTAACTCAATCTCCCAGTAATCAACAAATCAGTCATTCCATGAGTGACAGTCCACGGCAATCCCATAGAGTCAATTTCCACCTGGGCAACTCCAAAACTAAAGCAGAAAAGGTAGTTAATCAACTGAGCGAAAAGAGGAGCATATCCCCAGCTACAAGTCCTGATACAGCTCGTAAATTAGCAGAGGAAGCCACTAAACTCTCTGTACTCATGGAAGCCAGGAGGACTCCATCACCAACCCCATCATCAACAGACACAGTGAGGTCTGATAGTCCCCAGAGGGGACATTCACGGGAGCCCCAGGACTCTGAAGCACAATCACACTCTAACTGTAACCTTCCTGCTCATGAGCACAACAGGAAAAACTTCCAGACTTCTGTCAAGACTGGTTATCAATTTTTTCAATCGACCCCTCTTTTGTCCAACATTGGAAGTACTTCTCCCGCAGTTCCAGCAAGGTTGAACCGATCTGATGTAAAATCATCATCTCCCATACGTGACCCACAGATAGACAGAACACAGTTAGTGGGAAAGGACAGCCCCACTTTACATCGTCACCTACCTACCCAGTACACAAGAGACAATCATACACCCACCTATGACGGCCAGCTGCATGATACACTCAGAGGTCACAAAGACAGTCCAGACATCATCAGAAGGTCTTTCACTAGGCCAAACACAGATACATCTGCAACCTGGACCTCTCAGGAAAAACATGGATTAGAGGAATGCTTTACCAGAGACAAGAAAAGCTTGATGGAAGTAAATAATCAAAAGAGGAATAGTCTAAATACACCAGGCTCTCCAGACAACCACTGTGGTGTCTCAGTGCCACACAGTGAGATAAAAGGTCACAATCGGGCTAAAAAGGAGTGGAGTGGTACAGCATCACAGAGCTCCAGTGGAGTCAAAGGTAGTCTTGTGGAGAGCACTCTAcatgaaaaaaaacacatatcCTCTGAGACATCTAGCAGAACCAGCCAGAAGAGTTCTGACTCTGGAAACACAGCCATACAGGTAAGTTCACCTTCTTGTTACACATCTTTATCATCTCATGCTCAGATTCAGTGTGTGGTAATGATGTCTGATCAAGTCATTTTGGGTTGTAGTCTGAAAATGCAACATGTTTGCAGAGGCCTTCCTTGCACTCACAGAAGATTGCTCGTGCCAAATGGGAGTTCCTGTTTGGGTCCCACTCTGAAGACCAACAAACAAAAGACTCCTCCACTCCATCCTCTAGTGGCTGCTCCAGTGAGTCCCCGACGCCCATTCCACCCCTGTCTACCCACCTAA

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0009416 response to light stimulus biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012718 True 2931 lncRNA 0.46 3 22778060 22784433

Neighbor

gene id symbol gene type direction distance location
XLOC_006581 psda coding downstream 3569 22740038 ~ 22774491 (-)
XLOC_006580 glud1a coding downstream 79036 22679084 ~ 22699024 (-)
XLOC_006579 mmrn2a coding downstream 131926 22619684 ~ 22646134 (-)
XLOC_006578 BX649385.1 coding downstream 582892 22191361 ~ 22195168 (-)
XLOC_006577 NA coding downstream 838095 21925701 ~ 21939965 (-)
XLOC_006583 si:ch211-1n9.6 coding upstream 35052 22819485 ~ 22819667 (-)
XLOC_006584 pbld coding upstream 55388 22839821 ~ 22843805 (-)
XLOC_006585 BX530068.1 coding upstream 59397 22843830 ~ 22847484 (-)
XLOC_006586 pbld2 coding upstream 65363 22849796 ~ 22862133 (-)
XLOC_006587 rufy2 coding upstream 92034 22876467 ~ 22907260 (-)
XLOC_006471 BX537274.2 misc downstream 12513155 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 21951835 825904 ~ 826225 (-)
XLOC_006570 NA non-coding downstream 1630678 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 1698649 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 2046172 20729834 ~ 20731888 (-)
XLOC_006595 NA non-coding upstream 428326 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 623596 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1176859 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1342630 24127063 ~ 24127179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_13559514_13590448 PSD coding CI01000012 null 13559514 ~ 13590493 (+)