slc43a1b (slc43a1b,LOC107664571,LOC107551476,LOC107730511,LOC107674269,LOC107556815)


Basic Information

Item Value
gene id slc43a1b
gene name slc43a1b,LOC107664571,LOC107551476,LOC107730511,LOC107674269,LOC107556815
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20269043 ~ 20281302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238739.1
ACCATCCATAAATTGAGTTTGGTTTGGAAAGGTGGGGAGGAGGGTCAATGCCGAGAGCCATTTATAGACAAAACGAGCAGGGAGAGAGAAAGTGCATACAAAACTTGACATATCCTTTTTAGTTTCTACAAACGCGCAAGTGCAACCTGGAGCGCGCGGAGAGAAAAACGCTAAATTATAGCCCCGCTTGCGCGCTGCAAAGGATAAGTAACGCTGAGGAAAACCAGACACATGCCATTGCTATAAATAACAGTGCATAAAACAGTGCGCAATGGCTCCGTCGCTTTCACAGGCCTACAGGAGGCGCTGGTGGATGGCTGTCACATCAATCATAGAAAACCTGCTCTTCTCTGCCGTGTTGTTGGGTTGGGGATCTCTTCTTATCATGCTGAAGAATGAGGGCTTCTACTCACACCTGTGCACAGAGAATGTCACCGAGGCTCACGCTAATGTAAGTTTGACGGAGCGGGCGGTTTGGCTGAGCTGTATTGAGCAGGAGGAGATTCTGAATCTGGGCTTTACGATTGGCTCGTTCATCATCAGCGCAGCCACTCTGCCCCTTGGTGTCCTGATGGACAGGTTTGGACCACGTCCAATCAGATTGCTTGGCAGTTCGTGCTTTGCATTATCCATGGCTTTGATTGCAGTGGCGTCTTATGATCCAAAAGTGTTATCagctattatatttattgctgTGTCCATGAATGGGTTCGGAGGAATCTGTCTAACCTTCACTTCACTAACATTGCCAAATATGTTCGGGAATGTGCGGTCTACGATTCTTTCGCTCATGATTGGCTCGTACGCCTCCTCTGCTGTCACCTTCCCAGGAGTCAAGCTGATCTATGACATGGGCGTCTCTTTTTCTGTTATATTGTGGGTATGGGCAGGGTTTGCCTGCCTCGTCTTCCTCAACTGCTTTTTTAACTGGCCGGGAGAATCTTTTCCTGGCCCTGAGGACATCAGATACACGACAATGGTGAAGTTGACAAGTGAAGAAGAGGGCCAAAAGATGACTGAAGAAAGTTCTTTCACTCAGGAGACTCTTAAAGAGCAAGATTTGACCAAACAACAGCCTTCCACTGATGAAGCTCCCAGCCATGGGACAGCTGCTCAGAGCCAGGCAGTATCCCCTCCCTTTCATCGTTCTGTGTGCTCTCCTATATTCCTGTGGAGCATCATCACGATGGCCATGACCCAGCTCCGGGTCATTTTTTTCATGGGCGCTATGAATAAGATGTTGGAGTTCCTGGTTACCCATGGCGACCCCAATCccTCAGAGGAGTTGGTGAAGGAGGCAGAGGAGAAAGtgaatCTCTACTCGTCCATCTTTGGCACTCTTCAGCTGCTCTGTCTGGTCTCCTGTCCTCTGATTGGCTACATCATGGACTGGAGAATGAAGGAGTGCGAGGACGTGGTGAATTCAGCAGAGGGTGAAAAAAGTCCCTCCAGGCATCCAAAAAGGGACCGAAAGATCCAGAAACTCACTAACGCCATCAGAGCGTTCATCTTAACTAACACTCTGCTAGTCATCTTCGGCATCATCTCTCTCATTGACAATCTGCCCGTACAGGTGGTGTCATTTGTTCTTCACACTGCAGTTCGAGGTTTTTTTCACTCCTGCTGTGGTGGGCTCTACGCTGCTGTcTACCCAACCAATCACTTTGGCACTCTGACGGGCTTGCAGTCCACGATCAGCGCTGTGTTTGCCCTCCTACAACAACCACTCTTCATGTGCATGGTGGGACCGTTGCGGGGTGATCCTTATTGGATCAACTTGGGCCTGCTTGTGTTCTCATTGGTTGGATTCCTGCTGCCCGGATACCTCTTCTACCACCGGAGACAAATTATGAAGGAGAAGGCAGCGCTTAATAGTCTGTCAATGAGCCAGACGGTGCAGGAGAGCGACAGTCTCAACCAAACAAGCGATTCAGCAAAATATCAATCAAACGGGAACGCCTGAGGTGGAAAACATTGACAGTTGAGGCGTATGTGAATTATACGCCTGGTTTATGAATTATGATATCATGGCACTTCAGAAACGGAATTATTGACTTCGTGTTCAGTCACTGTGGAGACTtgacaaatataaaacagtgttaaaaaatagcaaatgtGCAATTTAAAGCTTCAGTCGAGCCTTTGAATGAGTGACTGAGCAGAATGTGTTTTCAAGTCTTTTATTATCAATCCGAAAAACATTATGCCTTCACTTAAAGTATGTAGTTTGCCGTTTTcttcaattattaatattgcatgGACACTTTGAAATGTCCATTAAAATGGTAGCAGAACCAGAAGGgagacttatatatataaaaaaattataaatgtcctTCTGTGAAGCACCTCCTTTCCTCATCACTTTTGTTAGTCAGTATGAATCAACATTTgctccatttatttgaaaagcagtgttattgtttttcagGGCATTTTATAACATATACAATCATTCTGTGTTTAGAATCTAAAATCAAAACTCGATCCAACTTGCTTAAAAAGGTAACCTTACCTTTAGTCCTTGTGTCTCGATCAAAAAGCTGAAATTTTCAGGAGAGTAGCTCACAAATGATTGGGAACTTTTATTCTACCATATTCAAGTCTTCATTATGTATGTGCAGGACACAAACATAAtcaaattaacaaaatgaaaataacacgccatttaaagaatgttttccTAACAGGTAAAACTTACCATGACATGGAtcgttttaatattaaaagtttgCTATCCCTCTTTTACTAAGCTTGAGAGAAATGCAGCGTTACGTGAAAATGGTAAATACAGATGATTCTTTTTATTGCAGAGGCCagtttttttactatatttgttgTTTCGAAAGTACTGTTCTGTATGTTTCAGGACTGTAATCATGTTACCGGTTTCAGTGATTCTACTGATTGTCCAACATAATGGTGCTTGTGCTGTGCTCACGactgtaaatatgcctgacaggggggaaaaaaatcaaataaattcaaatattttctcaCAAATCA
>XM_043238747.1
ACCATCCATAAATTGAGTTTGGTTTGGAAAGGTGGGGAGGAGGGTCAATGCCGAGAGCCATTTATAGACAAAACGAGCAGGGAGAGAGAAAGTGCATACAAAACTTGACATATCCTTTTTAGTTTCTACAAACGCGCAAGTGCAACCTGGAGCGCGCGGAGAGAAAAACGCTAAATTATAGCCCCGCTTGCGCGCTGCAAAGGATAAGTAACGCTGAGGAAAACCAGACACATGCCATTGCTATAAATAACAGTGCATAAAACAGTGCGCAATGGCTCCGTCGCTTTCACAGGCCTACAGGAGGCGCTGGTGGATGGCTGTCACATCAATCATAGAAAACCTGCTCTTCTCTGCCGTGTTGTTGGGTTGGGGATCTCTTCTTATCATGCTGAAGAATGAGGGCTTCTACTCACACCTGTGCACAGAGAATGTCACCGAGGCTCACGCTAATGTAAGTTTGACGGAGCGGGCGGTTTGGCTGAGCTGTATTGAGCAGGAGGAGATTCTGAATCTGGGCTTTACGATTGGCTCGTTCATCATCAGCGCAGCCACTCTGCCCCTTGGTGTCCTGATGGACAGGTTTGGACCACGTCCAATCAGATTGCTTGGCAGTTCGTGCTTTGCATTATCCATGGCTTTGATTGCAGTGGCGTCTTATGATCCAAAAGTGTTATCagctattatatttattgctgTGTCCATGAATGGGTTCGGAGGAATCTGTCTAACCTTCACTTCACTAACATTGCCAAATATGTTCGGGAATGTGCGGTCTACGATTCTTTCGCTCATGATTGGCTCGTACGCCTCCTCTGCTGTCACCTTCCCAGGAGTCAAGCTGATCTATGACATGGGCGTCTCTTTTTCTGTTATATTGTGGGTATGGGCAGGGTTTGCCTGCCTCGTCTTCCTCAACTGCTTTTTTAACTGGCCGGGAGAATCTTTTCCTGGCCCTGAGGACATCAGATACACGACAATGGTGAAGTTGACAAGTGAAGAAGAGGGCCAAAAGATGACTGAAGAAAGTTCTTTCACTCAGGAGACTCTTAAAGAGCAAGATTTGACCAAACAACAGCCTTCCACTGATGAAGCTCCCAGCCATGGGACAGCTGCTCAGAGCCAGGTATCCCCTCCCTTTCATCGTTCTGTGTGCTCTCCTATATTCCTGTGGAGCATCATCACGATGGCCATGACCCAGCTCCGGGTCATTTTTTTCATGGGCGCTATGAATAAGATGTTGGAGTTCCTGGTTACCCATGGCGACCCCAATCccTCAGAGGAGTTGGTGAAGGAGGCAGAGGAGAAAGtgaatCTCTACTCGTCCATCTTTGGCACTCTTCAGCTGCTCTGTCTGGTCTCCTGTCCTCTGATTGGCTACATCATGGACTGGAGAATGAAGGAGTGCGAGGACGTGGTGAATTCAGCAGAGGGTGAAAAAAGTCCCTCCAGGCATCCAAAAAGGGACCGAAAGATCCAGAAACTCACTAACGCCATCAGAGCGTTCATCTTAACTAACACTCTGCTAGTCATCTTCGGCATCATCTCTCTCATTGACAATCTGCCCGTACAGGTGGTGTCATTTGTTCTTCACACTGCAGTTCGAGGTTTTTTTCACTCCTGCTGTGGTGGGCTCTACGCTGCTGTcTACCCAACCAATCACTTTGGCACTCTGACGGGCTTGCAGTCCACGATCAGCGCTGTGTTTGCCCTCCTACAACAACCACTCTTCATGTGCATGGTGGGACCGTTGCGGGGTGATCCTTATTGGATCAACTTGGGCCTGCTTGTGTTCTCATTGGTTGGATTCCTGCTGCCCGGATACCTCTTCTACCACCGGAGACAAATTATGAAGGAGAAGGCAGCGCTTAATAGTCTGTCAATGAGCCAGACGGTGCAGGAGAGCGACAGTCTCAACCAAACAAGCGATTCAGCAAAATATCAATCAAACGGGAACGCCTGAGGTGGAAAACATTGACAGTTGAGGCGTATGTGAATTATACGCCTGGTTTATGAATTATGATATCATGGCACTTCAGAAACGGAATTATTGACTTCGTGTTCAGTCACTGTGGAGACTtgacaaatataaaacagtgttaaaaaatagcaaatgtGCAATTTAAAGCTTCAGTCGAGCCTTTGAATGAGTGACTGAGCAGAATGTGTTTTCAAGTCTTTTATTATCAATCCGAAAAACATTATGCCTTCACTTAAAGTATGTAGTTTGCCGTTTTcttcaattattaatattgcatgGACACTTTGAAATGTCCATTAAAATGGTAGCAGAACCAGAAGGgagacttatatatataaaaaaattataaatgtcctTCTGTGAAGCACCTCCTTTCCTCATCACTTTTGTTAGTCAGTATGAATCAACATTTgctccatttatttgaaaagcagtgttattgtttttcagGGCATTTTATAACATATACAATCATTCTGTGTTTAGAATCTAAAATCAAAACTCGATCCAACTTGCTTAAAAAGGTAACCTTACCTTTAGTCCTTGTGTCTCGATCAAAAAGCTGAAATTTTCAGGAGAGTAGCTCACAAATGATTGGGAACTTTTATTCTACCATATTCAAGTCTTCATTATGTATGTGCAGGACACAAACATAAtcaaattaacaaaatgaaaataacacgccatttaaagaatgttttccTAACAGGTAAAACTTACCATGACATGGAtcgttttaatattaaaagtttgCTATCCCTCTTTTACTAAGCTTGAGAGAAATGCAGCGTTACGTGAAAATGGTAAATACAGATGATTCTTTTTATTGCAGAGGCCagtttttttactatatttgttgTTTCGAAAGTACTGTTCTGTATGTTTCAGGACTGTAATCATGTTACCGGTTTCAGTGATTCTACTGATTGTCCAACATAATGGTGCTTGTGCTGTGCTCACGactgtaaatatgcctgacaggggggaaaaaaatcaaataaattcaaatattttctcaCAAATCA

Function

symbol description
slc43a1b Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in neutral amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intermediate cell mass of mesoderm. Orthologous to human SLC43A1 (solute carrier family 43 member 1).

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08228 SLC43A1; MFS transporter, LAT3 family, solute carrier family 43, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238739.1 True 3006 mRNA 0.44 15 20269043 20281302
XM_043238747.1 False 3003 mRNA 0.44 15 20269043 20281302

Neighbor

gene id symbol gene type direction distance location
si:dkey-28b4.8 si:dkey-28b4.8,LOC107664566,LOC107551445,LOC107556825,LOC108434786,LOC108262771 coding upstream 3974 20244740 ~ 20265069 (+)
si:dkey-9i23.6 NA coding upstream 53304 20209054 ~ 20215739 (+)
si:dkey-9i23.8 LOC107679872,LOC107749759,LOC107556828,LOC107552182 coding upstream 60912 20203335 ~ 20208131 (+)
tcirg1a tcirg1a,LOC107679885,LOC107749787,LOC107551357 coding upstream 95457 20163529 ~ 20173586 (+)
tmem109 LOC107679866,LOC107750001,LOC107552630,LOC107674242 coding upstream 120888 20146023 ~ 20148155 (+)
tmx2b tmx2b,LOC107664575,LOC107674258,LOC107556817,LOC107730509,LOC107551492 coding downstream 2940 20284242 ~ 20288623 (+)
cryba1l2 cryba1l2,LOC107556821,LOC107664562,LOC107674250,LOC107551533,LOC107746552 coding downstream 70348 20351650 ~ 20355234 (+)
slc43a3a slc43a3a,LOC107746630,LOC107674217,LOC107730523,LOC107664567,LOC107551582 coding downstream 125117 20406419 ~ 20413525 (+)
vwa11 LOC107730535,LOC107556812,LOC107674268 coding downstream 151702 20433004 ~ 20444796 (+)
si:ch73-109d9.2 LOC107674212,LOC107746722,LOC107556810,LOC107730527,LOC107664578 coding downstream 169856 20451158 ~ 20454879 (+)
G4686 rgs12b,LOC107749922,LOC107679871,LOC107551217 non-coding upstream 268495 19999341 ~ 20000548 (+)
G4680 NA non-coding upstream 284062 19984725 ~ 19984981 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding upstream 285916 19982804 ~ 19983127 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding upstream 288421 19978969 ~ 19980622 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding upstream 296778 19970776 ~ 19972265 (+)
G4817 NA non-coding downstream 72676 20353978 ~ 20354347 (+)
G4820 NA non-coding downstream 76638 20357940 ~ 20417720 (+)
G4823 NA non-coding downstream 84557 20365859 ~ 20366583 (+)
G4829 NA non-coding downstream 96023 20377325 ~ 20379332 (+)
LOC122345303 NA non-coding downstream 120549 20401851 ~ 20404258 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 25694 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 123187 20142461 ~ 20145856 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 491993 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 746644 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1984399 18247250 ~ 18284644 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1040160 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1309575 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1350913 21632215 ~ 21635052 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 2559386 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 3261762 23543064 ~ 23554625 (+)

Expression


Co-expression Network