LOC122345057


Basic Information

Item Value
gene id LOC122345057
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21905701 ~ 21906555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238887.1
CGCCGCTTGGACGGACCTTGCGTTCGGCCCGCAGCCCTTTGCGTCGAGACCATGCGTTCcgctcatttcattttattttttaccttacaAACGCGGGTATTCGGAATCTCCTTTCAGTCGCGTTTGACTAAAAAGTCACATGGATCTCGTGAAATTTTACAACCCGACCCGAGAAGGGATGGATATCCGACAAGTACGGTGATGTTGGGAAATGCAAGTCTAGAAAACGCACAAGAACGTTTGCGCATAAGCTTGCAGGACAGTGCTAAGATCTCCAACCCAACAGTGAATTCCGCTCACAGGCCGTCCTCCACAAACGCGAAAGAATTCTGGAATCAGTTCCTGTTTCGAGGAAAATCAGACTTCAGATACGTGCTGCCGTTCAGGAGCGCCGAGGTCCGTCAAGAACAGTGTCGAGCGCTCACTTTCTCTCAGAGGATCGTCCAAGAAAACTGTGAAACGTTGGAGCTTCAGAACAACGTGTGTTTCGGAAAATGTGCCTCGTCGCCCTCTAGGGGTGATGAAGGAGGTTCGTTTCCTTGTTCTGTTTGCTCGCCGGTTGTCATCACTCTCAAGACAGTGAAGCTGAAATGCTCTGACGACGCGGAAATGataaaagttgtaaaaataaTAGAAGACTgtcaatgtaaaacaaaataagcaCAATATTCCTATCATAAGGGTCTAGCACTGGTTGATCCAGGAGTATTAAATACCCTCAAAAGCGATGAAACATAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0007498 mesoderm development biological_process
GO:0003146 heart jogging biological_process
GO:0032924 activin receptor signaling pathway biological_process

KEGG:

id description
K01645 CER1; cerberus 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238887.1 True 738 mRNA 0.47 2 21905701 21906555

Neighbor

gene id symbol gene type direction distance location
rps6 rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729 coding downstream 550 21901467 ~ 21905151 (-)
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding downstream 5175 21890352 ~ 21900526 (-)
trnat-ugu NA coding downstream 21511 21884118 ~ 21884190 (-)
dtx4b dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012 coding downstream 23348 21866992 ~ 21882353 (-)
LOC122348936 NA coding downstream 58546 21833362 ~ 21847155 (-)
zgc:111983 NA coding upstream 40306 21946861 ~ 21951154 (-)
ddx39aa LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357 coding upstream 161510 22068065 ~ 22072544 (-)
LOC122347503 LOC107712219,LOC107552443 coding upstream 204957 22111512 ~ 22118077 (-)
si:ch73-90k17.1 NA coding upstream 212791 22119346 ~ 22122849 (-)
f8a zgc:101679,LOC107551875,LOC107676892,LOC107712230,LOC107692150,LOC107603023,LOC107718725,LOC108428241 coding upstream 221788 22128343 ~ 22132730 (-)
G5047 NA non-coding downstream 285120 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1186811 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1203403 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1436686 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1445517 20459541 ~ 20460184 (-)
G5327 NA non-coding upstream 137347 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 441959 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 505907 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 528058 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 538403 22444958 ~ 22446648 (-)
LOC122348907 NA other downstream 105957 21761881 ~ 21799744 (-)
G5108 NA other downstream 132939 21724387 ~ 21772762 (-)
G5104 NA other downstream 139417 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 341624 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 495130 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 352884 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 366263 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 633129 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 958276 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 1007345 22913900 ~ 22916405 (-)

Expression


Co-expression Network