agpat3 (agpat3,LOC107746273,LOC107676863,LOC107692122)


Basic Information

Item Value
gene id agpat3
gene name agpat3,LOC107746273,LOC107676863,LOC107692122
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22800579 ~ 22818012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239553.1
ATCGGACAGGAAGTCCCACGACTAGatgcaatgtgtgtgtgctgtgcgtGGATGGATAACGACACATCTGAGCAGCAGCACAGAGGCTTAGATGCCAGTTTCCGACAGCATTATCACATTGCGTCGCATTAAACGGAAAAGCACGAATCCTCCACGCGGATCCACTGATGACATTTAAGCAGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGACGAACTTGCTGTGctgtgtgtgtgtgtgtgtgggggtgagtgtgtgtgtgtgtgcgcgtgtgtgcgtgtgtgtgtgtgagtgggggtgagtgtgagagtgtgtgtggaaggGGCTCTCAGTCATGGGTGTGGTGGCATGGCTGAAGAGCCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTCGTGGTGAGTGGCCTCATTATTAACTTCATCCAGCTGTGCACCTGTGTGCTGTGGCCCTTCAACAAACAGCTGTACCGCAAGATCAACACCAGACTGTCCTACTCGCTATGGAGCCAGCTGGTGATGCTGTTAGAGTGGTGGTCTGGCACAGAGTGTATGCTGTACACCGATCAGGCCACGGTGGATAAGTTTGGTAAAGAGCACGTCATCATCATCCTCAACCATAACTATGAGATCGACTTCCTGTGTGGCTGGACCATGTGTGAGAGATACGGCATACTGGGGagTTCTAAGGTTCTGGCTAAACACGAACTGCTGAAAGTTCCTCTAATCGGCTGGACGTGGTACTTCCTTGAAATTGTTTTCTGCAAGCGGAAGTGGGAGGAAGACAGAGATACTGTGTTCAGTGGGCTGAACCGTCTTCGAGATTACCCAGAATACATGTGGtTCCTGCTGTACTGTGAAGGAACGAGATTTACGGAAAAGAAACATCAGATAAGCATGCAGGTGGCTGAGAGTAAGGGCCTTCCAAAACTGAAGTACCACCTGCTGCCCCGCACCAAAGGATTCACCACTACACTTCAATGCCTCAAGGGAACAGTGAAAGCTGTGTACGATGTCACGCTGAACTTCAAAGACAAGCAGAACCCGACCCTGCTGGGCATCGTTAACGGGAAGAAATACAAAGCGGACCTGAGCGTCAGGCGCTTCCCTGTGGAGGAGATACCTGATGACGAGAAGGAGTGCGCTGACTGGTTACACAAGCTCTACCAAGAGAAGGATGCGTTACAAGAACACTATGAGAAGGAAGGCTGTTTCCCTGGCCCCACCATCGAACCCAAACGTCGAGTTTGGACACTGCTCAACTTCCTGTTTTGGGCTACTCTCCTGCTTTCTCCGCTTATTAACTTTGCCTGGGATGTCTTTGTCAGCGGCTCTCCCCTCCTCATCATTGGCTTTATGATCTTCCTCATTGTCGCTTCTGTAGCAGTTCGTCGGCTCATCGGTGTAACCGAAGTGAAGAAGACAGGATCCAGCTACGGCAACACAGAGGCCAAGAAGGAGAACTAAACATTTTCACCGTGTCAACACCGTGTGGCCACTGTATCGCTCACCCTAGAGTCCAGCCTCAGGCACAGAGCTGCCCTGTGTGCAGTTATCcttctttttacaaaaaaaaaaagtaattaaaaaaaaacgaatgaaatattaaaatctaaGCATTGGGAGGTATATAGGGGTATAACTGTAGATTTAACTTAATACGCTAGTCTATAAACATTACGATCATTTTTATGAACCAACTAAATGGGAAATAGAGGGGAAGAAACACTCGTCAGCTGCGGATCGATGACGAAATGCTCGTCTTCTCCGGCAGAGAAAGATGAGATGAACTAGAGAGACCAACCGCTGATACGCCTATCAACCTATCAGTGACTTGTCCctcctgtttagccccgcccttTAACATAAGACCGCCCCTTTCCCCAAACAAGCCCACTTCTTGTCATAGTTCTCCATTAATATTCATCATCTCCAGAAGTGCTTTGTAACACTTCCTTCACTGCATCTACAATATCAGTAGTTGTTTCCTCACAACGTTCCTCTTCCGATCTTCACCCTGAAACCACTCGGACTGATTTTCTGCGATCAGAAATGAGGAAGATCGCTTGAGGAAGACAAACAGCCCAGACGATCAACAATGATGGTCACGATCCATCCAACAAATGAACTGTTGTAGATCTTTGGTCTACTGCAGCTGGAGTGACGTTGGTGAAAAGTTTATGACCAACATGGTTAAAGATGTGGACTGAGCAAGGAAAAGCATGTCTTCTGTACTCCCATTTTTGAGACCTTTTCACGATGGTGTCTTAACCCACTGCGTCACCATTGTATTACTGGCTATGCTAAATAAGCGATAAATGTTTTCTACCAGTGTACTCCAAATCACCTACAGCATCTGTTTAGTTAGTGAGCAGTTTTGTCAGGAAATCGAAGGCCCATGGACCATGCTTCAGTTGCCCAATCTCTCTAGCCATGTGTAACTTATGAAATGCAGGGGTTGAAGAGCGACGGTGTGAGAGTAGCTGAATGACCAAGAAGAAAATGAGTTCTGTCAATAAAGAACGAGTATGAAAACTGTTTAGTGTGAACTAATGACACTAATGGTTTGTAAATAAACTCTAGAAGTTTCTTCTTGACTCAAATCCA
>XM_043239561.1
TTCAATTCATGCTGTGGTGGACAGGAGGACAGAGTTCAACTCTTTCCTTTCCCACCCTCACTCATTTTTCTTCCTTCGGTCGGTCTCTGTCCACTGTAAAGTCACAGTTAATCTTCTACACTGCCTATGGATCTTCATCTAAGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGACGAACTTGCTGTGctgtgtgtgtgtgtgtgtgggggtgagtgtgtgtgtgtgtgcgcgtgtgtgcgtgtgtgtgtgtgagtgggggtgagtgtgagagtgtgtgtggaaggGGCTCTCAGTCATGGGTGTGGTGGCATGGCTGAAGAGCCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTCGTGGTGAGTGGCCTCATTATTAACTTCATCCAGCTGTGCACCTGTGTGCTGTGGCCCTTCAACAAACAGCTGTACCGCAAGATCAACACCAGACTGTCCTACTCGCTATGGAGCCAGCTGGTGATGCTGTTAGAGTGGTGGTCTGGCACAGAGTGTATGCTGTACACCGATCAGGCCACGGTGGATAAGTTTGGTAAAGAGCACGTCATCATCATCCTCAACCATAACTATGAGATCGACTTCCTGTGTGGCTGGACCATGTGTGAGAGATACGGCATACTGGGGagTTCTAAGGTTCTGGCTAAACACGAACTGCTGAAAGTTCCTCTAATCGGCTGGACGTGGTACTTCCTTGAAATTGTTTTCTGCAAGCGGAAGTGGGAGGAAGACAGAGATACTGTGTTCAGTGGGCTGAACCGTCTTCGAGATTACCCAGAATACATGTGGtTCCTGCTGTACTGTGAAGGAACGAGATTTACGGAAAAGAAACATCAGATAAGCATGCAGGTGGCTGAGAGTAAGGGCCTTCCAAAACTGAAGTACCACCTGCTGCCCCGCACCAAAGGATTCACCACTACACTTCAATGCCTCAAGGGAACAGTGAAAGCTGTGTACGATGTCACGCTGAACTTCAAAGACAAGCAGAACCCGACCCTGCTGGGCATCGTTAACGGGAAGAAATACAAAGCGGACCTGAGCGTCAGGCGCTTCCCTGTGGAGGAGATACCTGATGACGAGAAGGAGTGCGCTGACTGGTTACACAAGCTCTACCAAGAGAAGGATGCGTTACAAGAACACTATGAGAAGGAAGGCTGTTTCCCTGGCCCCACCATCGAACCCAAACGTCGAGTTTGGACACTGCTCAACTTCCTGTTTTGGGCTACTCTCCTGCTTTCTCCGCTTATTAACTTTGCCTGGGATGTCTTTGTCAGCGGCTCTCCCCTCCTCATCATTGGCTTTATGATCTTCCTCATTGTCGCTTCTGTAGCAGTTCGTCGGCTCATCGGTGTAACCGAAGTGAAGAAGACAGGATCCAGCTACGGCAACACAGAGGCCAAGAAGGAGAACTAAACATTTTCACCGTGTCAACACCGTGTGGCCACTGTATCGCTCACCCTAGAGTCCAGCCTCAGGCACAGAGCTGCCCTGTGTGCAGTTATCcttctttttacaaaaaaaaaaagtaattaaaaaaaaacgaatgaaatattaaaatctaaGCATTGGGAGGTATATAGGGGTATAACTGTAGATTTAACTTAATACGCTAGTCTATAAACATTACGATCATTTTTATGAACCAACTAAATGGGAAATAGAGGGGAAGAAACACTCGTCAGCTGCGGATCGATGACGAAATGCTCGTCTTCTCCGGCAGAGAAAGATGAGATGAACTAGAGAGACCAACCGCTGATACGCCTATCAACCTATCAGTGACTTGTCCctcctgtttagccccgcccttTAACATAAGACCGCCCCTTTCCCCAAACAAGCCCACTTCTTGTCATAGTTCTCCATTAATATTCATCATCTCCAGAAGTGCTTTGTAACACTTCCTTCACTGCATCTACAATATCAGTAGTTGTTTCCTCACAACGTTCCTCTTCCGATCTTCACCCTGAAACCACTCGGACTGATTTTCTGCGATCAGAAATGAGGAAGATCGCTTGAGGAAGACAAACAGCCCAGACGATCAACAATGATGGTCACGATCCATCCAACAAATGAACTGTTGTAGATCTTTGGTCTACTGCAGCTGGAGTGACGTTGGTGAAAAGTTTATGACCAACATGGTTAAAGATGTGGACTGAGCAAGGAAAAGCATGTCTTCTGTACTCCCATTTTTGAGACCTTTTCACGATGGTGTCTTAACCCACTGCGTCACCATTGTATTACTGGCTATGCTAAATAAGCGATAAATGTTTTCTACCAGTGTACTCCAAATCACCTACAGCATCTGTTTAGTTAGTGAGCAGTTTTGTCAGGAAATCGAAGGCCCATGGACCATGCTTCAGTTGCCCAATCTCTCTAGCCATGTGTAACTTATGAAATGCAGGGGTTGAAGAGCGACGGTGTGAGAGTAGCTGAATGACCAAGAAGAAAATGAGTTCTGTCAATAAAGAACGAGTATGAAAACTGTTTAGTGTGAACTAATGACACTAATGGTTTGTAAATAAACTCTAGAAGTTTCTTCTTGACTCAAATCCA

Function

symbol description
agpat3 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3).

NR:

description
PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239553.1 True 2624 mRNA 0.47 10 22800579 22818012
XM_043239561.1 False 2585 mRNA 0.47 10 22800579 22810441

Neighbor

gene id symbol gene type direction distance location
dleu7 LOC107746276,LOC107560974 coding downstream 2086 22796292 ~ 22798493 (-)
spryd7a spryd7,spryd7a,LOC107580268,LOC107676840,LOC107746271,LOC107718900 coding downstream 65392 22732039 ~ 22735187 (-)
kpna3 kpna3,LOC107746270,LOC107560982,LOC103046682,LOC107676880 coding downstream 69695 22715525 ~ 22730884 (-)
ebpl ebpl,LOC107718395,LOC107746301 coding downstream 86032 22711727 ~ 22714547 (-)
rcbtb1 rcbtb1,LOC107676891,LOC107746269,LOC107560987,LOC107718354 coding downstream 90765 22701331 ~ 22709814 (-)
pdxkb pdxk,pdxkb,LOC108428208,LOC103021965,LOC107676865,LOC108258310,LOC107718319,LOC105019670,LOC106574311 coding upstream 1334 22819346 ~ 22837408 (-)
pknox1.2 pknox1.2,LOC107560978,LOC107676856,LOC107603046,LOC107692119,LOC107718250,LOC107746279,LOC103022264 coding upstream 33696 22851708 ~ 22860712 (-)
si:dkey-22n8.3 NA coding upstream 42856 22860868 ~ 22864691 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding upstream 91983 22909995 ~ 22913608 (-)
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding upstream 334490 23152502 ~ 23203136 (-)
LOC122341430 NA non-coding downstream 35464 22759628 ~ 22765115 (-)
G5445 mcf2l,LOC107746267 non-coding downstream 118483 22681649 ~ 22682096 (-)
G5422 NA non-coding downstream 179362 22619809 ~ 22621217 (-)
G5413 NA non-coding downstream 195892 22603757 ~ 22604687 (-)
G5408 NA non-coding downstream 261059 22539269 ~ 22539520 (-)
G5464 NA non-coding upstream 20944 22838956 ~ 22839592 (-)
G5465 LOC107676845,LOC107746297,LOC107560973,LOC107692180,LOC107718848,LOC107603005 non-coding upstream 23790 22841802 ~ 22842024 (-)
G5466 NA non-coding upstream 33000 22851012 ~ 22851348 (-)
LOC122342025 NA non-coding upstream 155667 22973679 ~ 22978634 (-)
G5577 NA non-coding upstream 801688 23619700 ~ 23622881 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 197931 22539684 ~ 22602648 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other downstream 471650 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 513058 22272818 ~ 22287521 (-)
LOC122348907 NA other downstream 1000835 21761881 ~ 21799744 (-)
G5108 NA other downstream 1027817 21724387 ~ 21772762 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 46819 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 95888 22913900 ~ 22916405 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other upstream 200226 23018238 ~ 23030310 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 953012 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 1214851 24032863 ~ 24172062 (-)

Expression


Co-expression Network