XLOC_006583 (si:ch211-1n9.6)


Basic Information

Item Value
gene id XLOC_006583
gene name si:ch211-1n9.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22819485 ~ 22819667 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012719
ATGGacgctccagaagaaaaactgaAATGTCCTGTTTGTGTAGATGTCTTCACAGACCCTGTGTGCCTCCCATGCGGGCACAACTTCTGCCAAACCTGCATCCAAGCAGTCTGGAACATGGATGAGTCCAAAACATCCACAGAAGAGCCGCTTTTCTGTCCAGAATGTCAGATCCTGCTTCCT

Function

symbol description
si:ch211-1n9.6 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000113096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012719 True 183 mRNA 0.49 1 22819485 22819667

Neighbor

gene id symbol gene type direction distance location
XLOC_006582 CR550304.1 coding downstream 35052 22778060 ~ 22784433 (-)
XLOC_006581 psda coding downstream 44994 22740038 ~ 22774491 (-)
XLOC_006580 glud1a coding downstream 120461 22679084 ~ 22699024 (-)
XLOC_006579 mmrn2a coding downstream 173351 22619684 ~ 22646134 (-)
XLOC_006578 BX649385.1 coding downstream 624317 22191361 ~ 22195168 (-)
XLOC_006584 pbld coding upstream 20154 22839821 ~ 22843805 (-)
XLOC_006585 BX530068.1 coding upstream 24163 22843830 ~ 22847484 (-)
XLOC_006586 pbld2 coding upstream 30129 22849796 ~ 22862133 (-)
XLOC_006587 rufy2 coding upstream 56800 22876467 ~ 22907260 (-)
XLOC_006588 tspan15 coding upstream 104357 22924024 ~ 22961610 (-)
XLOC_006471 BX537274.2 misc downstream 12554580 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 21993260 825904 ~ 826225 (-)
XLOC_006577 NA non-coding downstream 879520 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1672103 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 1740074 21076652 ~ 21079411 (-)
XLOC_006595 NA non-coding upstream 393092 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 588362 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1141625 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1307396 24127063 ~ 24127179 (-)

Expression


Co-expression Network