emp1 (LOC107676894,LOC107712235,LOC107551885,LOC107718756,LOC107692152,LOC107603024)


Basic Information

Item Value
gene id emp1
gene name LOC107676894,LOC107712235,LOC107551885,LOC107718756,LOC107692152,LOC107603024
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22124510 ~ 22128348 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241003.1
ATGGGTGGGGTCCTCTATGCAGCAAAGAGCGCGTGAGGGGGGGGGCGAGGCGACGGACGAGGTGCGGGGAAGTGCGAATATCCTCGGATGGCGGGGCGTCAGATAGGCTACGAAAATCAAGAAATAAATTGAGCTTTAAATAACCCAAAGCAGGTGATCGTTCCACCCTGCTTCCCCCTCATCCTCTGAATATGTTCAAGGCCCTGGCAGGAATCTGTTTGCTTCACCTGACAAcaattttcttccttttttggGCAACTATAGATGACGCGTGGTGGTTCACAGAGAACCTTTACACAGACTTGTGGGGCAGATGGGTGATGGAGAACAATGATAATGTCTGGGTGTACACGGACATACCGACCTCATACAGGAAGGACTATCTGCAAGCGGTCCAGGCGTTTGCAGTCCTGTCCTGCCTGTTTGCTGTGTTCTCTCTGTGCATCTTCATATTCCAACTCTTTTCTCTGGGTAAAGGAAAGCGGTTCACCATTTCCGGAGTCGTGCAGCTCATCTCCTGTTTCTGCATCATGGTGGCTCTGTCGGTCTATACCGATCACTTTCACAGAAACGAGAAGAATGGCTGGTATGGCTGGTCCTACATCATGGCCTGGTTTGGATGGCTGCTGACCCTCTTCACTGGAATAATGTACATAATCTTGCGCAAACGAGGCGGATTAAACTTCAGACCTCGCTCTCAGTGCTTAATGTACAGCCTTAAATAGTTTTCTTCAACTTGAAAAATAACGAGTTGTCTCAAATATTACAGGCGTTGGCTGGAACTGCAGAAATGTGCGCAGCAAATCACAGCATCAGCGGTTCATTCAAACCGTTTCAAATCTGTCAGCGAGAAAGTGTTGATTCAGCGTTTGAGGAAAATTGGCTAGAAAAGTTTCTTTAACGAGAAGTGTTTTTTGCGTTATTGTTTAGAGTAATACTACAGCTCAGTTTGACGGGTCATCTTTCCTAGTTTCTCAAAGCACTGAGGGCAGTCAGAGGGTCTGAACACACTTTATTGCAGGGGTTGATGTGTAAAGATGGCGAGGATGCAGTACATATAAGAAaggaatgtaaaaaatgtatttataacatgtataaagagaaagataagTTGTACATATAAAGTGCTTAAAGAAAAGTATATGTTATCAAAGAGTAGTTTTGAACATCACTTGCACTTTAAGAACTAGGCTTGTCTTAAACATGGCTTTGTTTCGTTTCAGTTGATCTTTTTATGTTGGCAGTAGCACAGGATAGTCTCAAATAAGGATCAAATCTTTGTGACCGCGATGCATATGGTGCTGTTCAAACTTGTGATCATTCACTTGATCTAGATACTACACAATCCTTTTGTAATTGCACTGTACAGACCCTCTGCCATTATATTTGCAATTTGTGTGTGGACAAAGGCTTTCCTGATTATGAAATGGGCCCTGCTGCTATGCCAGCCATTTTAATTAGCATGACGTTGATGAGGTCAGATGATCACCCTGTAAAATTCTAGAGCACAGAATGTTCCAAAAGAAtttataaaaagcttttgttttttaattgtcaaaatgtatagttttatgGGAGAAATGATTCCACATCCTCTCGAGAAAACAGCTCTATATGGCCATCTGAGCGATTCAGTTGCCGCTAACTGTGTTTGGTTAAAATTTTAGCTGGTTCCagacatattttttatgttgcagTATGACCGTGAATGGAATGGATGTTATTTTTTCAATGCAAAGCCAAACCGTGTAAACCAGGGACGACATTCATTTTAGTattcacacaaataaaaacctcGCCCATAAGAA
>XM_043241011.1
CATGTGCTGCGTTTGGGCCGTTCAGCCACTTTTATGCCGCAGCTCTGAGTGCGACACCGGGCGAGAGGAGAGTCTGCTGCGCGTCTCCAGAAGAGCCGAGTGAAGGATGCTGCGGCATGCGGACACATCTCTGTATAGCGCACCAAAGCTTTAGCAGGTGATCGTTCCACCCTGCTTCCCCCTCATCCTCTGAATATGTTCAAGGCCCTGGCAGGAATCTGTTTGCTTCACCTGACAAcaattttcttccttttttggGCAACTATAGATGACGCGTGGTGGTTCACAGAGAACCTTTACACAGACTTGTGGGGCAGATGGGTGATGGAGAACAATGATAATGTCTGGGTGTACACGGACATACCGACCTCATACAGGAAGGACTATCTGCAAGCGGTCCAGGCGTTTGCAGTCCTGTCCTGCCTGTTTGCTGTGTTCTCTCTGTGCATCTTCATATTCCAACTCTTTTCTCTGGGTAAAGGAAAGCGGTTCACCATTTCCGGAGTCGTGCAGCTCATCTCCTGTTTCTGCATCATGGTGGCTCTGTCGGTCTATACCGATCACTTTCACAGAAACGAGAAGAATGGCTGGTATGGCTGGTCCTACATCATGGCCTGGTTTGGATGGCTGCTGACCCTCTTCACTGGAATAATGTACATAATCTTGCGCAAACGAGGCGGATTAAACTTCAGACCTCGCTCTCAGTGCTTAATGTACAGCCTTAAATAGTTTTCTTCAACTTGAAAAATAACGAGTTGTCTCAAATATTACAGGCGTTGGCTGGAACTGCAGAAATGTGCGCAGCAAATCACAGCATCAGCGGTTCATTCAAACCGTTTCAAATCTGTCAGCGAGAAAGTGTTGATTCAGCGTTTGAGGAAAATTGGCTAGAAAAGTTTCTTTAACGAGAAGTGTTTTTTGCGTTATTGTTTAGAGTAATACTACAGCTCAGTTTGACGGGTCATCTTTCCTAGTTTCTCAAAGCACTGAGGGCAGTCAGAGGGTCTGAACACACTTTATTGCAGGGGTTGATGTGTAAAGATGGCGAGGATGCAGTACATATAAGAAaggaatgtaaaaaatgtatttataacatgtataaagagaaagataagTTGTACATATAAAGTGCTTAAAGAAAAGTATATGTTATCAAAGAGTAGTTTTGAACATCACTTGCACTTTAAGAACTAGGCTTGTCTTAAACATGGCTTTGTTTCGTTTCAGTTGATCTTTTTATGTTGGCAGTAGCACAGGATAGTCTCAAATAAGGATCAAATCTTTGTGACCGCGATGCATATGGTGCTGTTCAAACTTGTGATCATTCACTTGATCTAGATACTACACAATCCTTTTGTAATTGCACTGTACAGACCCTCTGCCATTATATTTGCAATTTGTGTGTGGACAAAGGCTTTCCTGATTATGAAATGGGCCCTGCTGCTATGCCAGCCATTTTAATTAGCATGACGTTGATGAGGTCAGATGATCACCCTGTAAAATTCTAGAGCACAGAATGTTCCAAAAGAAtttataaaaagcttttgttttttaattgtcaaaatgtatagttttatgGGAGAAATGATTCCACATCCTCTCGAGAAAACAGCTCTATATGGCCATCTGAGCGATTCAGTTGCCGCTAACTGTGTTTGGTTAAAATTTTAGCTGGTTCCagacatattttttatgttgcagTATGACCGTGAATGGAATGGATGTTATTTTTTCAATGCAAAGCCAAACCGTGTAAACCAGGGACGACATTCATTTTAGTattcacacaaataaaaacctcGCCCATAAGAA

Function

NR:

description
PREDICTED: epithelial membrane protein 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241003.1 False 1808 mRNA 0.42 5 22124960 22128348
XM_043241011.1 True 1812 mRNA 0.43 5 22124510 22128348

Neighbor

gene id symbol gene type direction distance location
evi5l evi5l,LOC107676895,LOC107718810,LOC107692153,LOC108428244 coding upstream 13159 22073396 ~ 22111351 (+)
LOC122352554 NA coding upstream 56582 22065793 ~ 22067928 (+)
si:ch211-151p13.8 si:ch211-151p13.8,LOC107692197,LOC107746734,LOC107676123,LOC107551838,LOC107720312,LOC107602984 coding upstream 203704 21913998 ~ 21920806 (+)
btr01 LOC107676126,LOC107551815,LOC107746733,LOC107720311,LOC107692198,LOC107603009 coding upstream 210930 21908146 ~ 21913580 (+)
dnaja1 dnaja1,LOC107746728,LOC107603013,LOC107676129,LOC107720316,LOC107551804,LOC108431796,LOC108260608,LOC106591825 coding upstream 234340 21884766 ~ 21890170 (+)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 coding downstream 10107 22138455 ~ 22144079 (+)
trappc5 trappc5,LOC107692146,LOC107712234,LOC107676838 coding downstream 165100 22293448 ~ 22295199 (+)
mcoln1a mcoln1a,mcoln1,LOC107561871,LOC107676888,LOC107603030,LOC107718592 coding downstream 167684 22296032 ~ 22309386 (+)
si:ch211-214c7.4 LOC107676873,LOC107561873,LOC107712236,LOC107692142,LOC107718585,LOC107603029 coding downstream 181549 22309897 ~ 22333823 (+)
pkn1a LOC107712223,LOC107676851,LOC107603033,LOC107561874 coding downstream 210431 22338779 ~ 22370612 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 54376 22068067 ~ 22070134 (+)
G5132 NA non-coding upstream 82398 22041866 ~ 22042112 (+)
G5112 NA non-coding upstream 173175 21945811 ~ 21951335 (+)
G5111 rps6,LOC107603014,LOC107551827,LOC107676127,LOC107720314 non-coding upstream 219401 21899050 ~ 21905109 (+)
G5118 dtx4,LOC107746726,LOC107676128,LOC107692161,LOC107603012 non-coding upstream 252801 21869900 ~ 21871709 (+)
G5159 NA non-coding downstream 103999 22232347 ~ 22235529 (+)
G5178 NA non-coding downstream 256918 22385266 ~ 22387528 (+)
LOC122350977 NA non-coding downstream 397774 22526122 ~ 22530488 (+)
G5206 NA non-coding downstream 410922 22539270 ~ 22539472 (+)
G5223 NA non-coding downstream 587188 22715536 ~ 22733117 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 489458 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 503918 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 763070 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 1881161 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 1978654 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 712340 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1414716 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 2155134 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2428449 24556797 ~ 24558929 (+)
G5817 NA other downstream 2575500 24703848 ~ 24704319 (+)

Expression


Co-expression Network