ebpl (ebpl,LOC107718395,LOC107746301)


Basic Information

Item Value
gene id ebpl
gene name ebpl,LOC107718395,LOC107746301
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22711727 ~ 22714547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241154.1
CACCGTTAGAACGAGGGGCGGGGCCTGGATGTGTCATTCAAACAACTGCAAACTTCTAAATACGATGGCAGAAAGCGAACAACCTGCACTTTTCACTAAAGTTACGGTTTATTCTCTACTCGCGTGTGCGGCTCAGTTTGCTGTCGGGTTTGTTTTTGCGCAAAAATGGGGTAACAAATGCTCAGCTGTTGATCGGTGGGTGCTCGTGTGGTTGTTTTACGACGCAATTGTTCATTTTACTCTGGAGGGACCCTTCGTCTACATGTCACTTGTTGGAAACGTGGCGACTTCTGACGGTGTATTGGCAGAGCTATGGAAAGAGTATGGCAAGGCAGATGAGCGCTGGTTGTACTCCGACCCAACAATAGTGTCTCTGGAGCTTCTGACCGTGGTTTTAGATGGTTTTTTGGCCTTGCTTCTAGTCTATGCCATCATCAAAGACAAGCACTACAGGCACTTCGTTCAGatcacactgtgtgtgtgcgagttGTACGGGGGCTGGATGACCTTCTGTCCGGACTGGCTAGTCGGAAGCCCTAGCCTGAACACCAGCAACTGGCTGTACCTGTGGGTCTACCTGGCGTTTTTCAATGGGATCTGGGTGCTGGTGCCTGGACTCCTCCTCTGGCAGTCATGGAGGGATTTAAGAGGAATGCATCAGTATCCAAAGAAGAAGAACAGATAGATTCAGAGGAACTGTGGTCGTTAGTAATCAGCCATATGATTGCCGTAATTAGCCTTTCACAATGAACAGAATGAGATGTGGAGAGAATATACTGCAGatgatgcatttacatttattgtgatCACAGAATATTAGAGGAACAGTTGTTAAGGCGTATCTTTGAATAATTGCCGTAGTAAAGACACAAAGGAAGTGTCTCATACTATCTGCATTCCTACCCTATGACACCTAAACAGTGAAtgctttattattactttttttttaatattcatacacTGATCCAGGAGCGGTTTCCAACTAATCGCCTTAGAAAACTAACTTATCCAGTCCGACAGAAAGCACGCATTGGTTCAATTCATGTTTCATCGCACCTGCttgtctttaaaatattgatGAATCATGCTTCTTTTTACGCAGACTGTGCTATTGAGTTGGCTGTTTTCTTGCGAGGTTTTGACAGCATAACAGGCAAGCCTGATGTATTTCGGTCATAGTCACTTATATGCGCAGGCCTGATCAAGAGATTTTAGGTATTTTCTCTATCATCGCAATTTcaagtattcatttattgcacAATTTGGGATTTGCAATTTTACTACAGCTTcatgtgtaaataatataaaagggTAAACGTTTACAATAAAGGCACATTAGTTCATGGTAATCAATGCCTTAATTTGCAATATTTGTTATGGTGAAAAATGTTAcctataaaacacaaatttcatttaaaatcgCCTAATTTCATGAGTTTACCATTTGagttaaagtaatatttttccTTATAACGTATAACCTACAGTTAAACTCAAATACATGATGTATAAACAGATGTCGTCAACGTGGCATTAACGAtgatgaatatgttttaaacataagttcatgttaattaatgtagTTAACTGAAGTTGATTGAACCTTATTGTGAAGTCTAAAACGAAATTGCATTTCAAAGCACCTGCTTTCTATTAATTTTCTTCAATAAAGCGTGCAGTATCAAAATGCATGTATCGCAGGATTCTCATCAAAATCACCTCGGCTGCCaaaatagtcatttatttacaagGGAAAAGATGTTTGCAATAACTACAGTGCATACGCTAAGTGCAGCACAGGAAGACGAGTAACACGTAATATTTACAGCACACACAAGAACAATAAACAAGTGCAGCAGTTCATTCAGTGCATTATTTCTCAACATTCTTGCTCTTGGCGCTATGCCTCTTCATTTTGATTGTTAGTAAGTTTACGCTTCAATAAAAGGAGACATTCTATGTA

Function

symbol description
ebpl Predicted to enable cholestenol delta-isomerase activity. Predicted to act upstream of or within sterol metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human EBPL (EBP like).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241154.1 True 1963 mRNA 0.40 4 22711727 22714547

Neighbor

gene id symbol gene type direction distance location
rcbtb1 rcbtb1,LOC107676891,LOC107746269,LOC107560987,LOC107718354 coding downstream 1913 22701331 ~ 22709814 (-)
cdadc1 LOC107676859,LOC107560988,LOC107718418,LOC107603039,LOC107692129,LOC107746266 coding downstream 11180 22694830 ~ 22700547 (-)
pnpla6 pnpla6,LOC107712242,LOC107676850,LOC107718547,LOC107692140 coding downstream 300029 22385513 ~ 22411698 (-)
c1h19orf67 LOC107712227,LOC107676872,LOC107561872 coding downstream 375435 22332974 ~ 22336292 (-)
serhl serhl2,LOC107603032,LOC107718629,LOC107692145,LOC107561867 coding downstream 418366 22288682 ~ 22293361 (-)
kpna3 kpna3,LOC107746270,LOC107560982,LOC103046682,LOC107676880 coding upstream 978 22715525 ~ 22730884 (-)
spryd7a spryd7,spryd7a,LOC107580268,LOC107676840,LOC107746271,LOC107718900 coding upstream 17492 22732039 ~ 22735187 (-)
dleu7 LOC107746276,LOC107560974 coding upstream 81745 22796292 ~ 22798493 (-)
agpat3 agpat3,LOC107746273,LOC107676863,LOC107692122 coding upstream 86032 22800579 ~ 22818012 (-)
pdxkb pdxk,pdxkb,LOC108428208,LOC103021965,LOC107676865,LOC108258310,LOC107718319,LOC105019670,LOC106574311 coding upstream 104799 22819346 ~ 22837408 (-)
G5445 mcf2l,LOC107746267 non-coding downstream 29631 22681649 ~ 22682096 (-)
G5422 NA non-coding downstream 90510 22619809 ~ 22621217 (-)
G5413 NA non-coding downstream 107040 22603757 ~ 22604687 (-)
G5408 NA non-coding downstream 172207 22539269 ~ 22539520 (-)
G5405 NA non-coding downstream 184862 22526641 ~ 22526865 (-)
LOC122341430 NA non-coding upstream 45081 22759628 ~ 22765115 (-)
G5464 NA non-coding upstream 124409 22838956 ~ 22839592 (-)
G5465 LOC107676845,LOC107746297,LOC107560973,LOC107692180,LOC107718848,LOC107603005 non-coding upstream 127255 22841802 ~ 22842024 (-)
G5466 NA non-coding upstream 136465 22851012 ~ 22851348 (-)
LOC122342025 NA non-coding upstream 259132 22973679 ~ 22978634 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 109079 22539684 ~ 22602648 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other downstream 382798 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 424206 22272818 ~ 22287521 (-)
LOC122348907 NA other downstream 911983 21761881 ~ 21799744 (-)
G5108 NA other downstream 938965 21724387 ~ 21772762 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 150284 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 199353 22913900 ~ 22916405 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other upstream 303691 23018238 ~ 23030310 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 1056477 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 1318316 24032863 ~ 24172062 (-)

Expression


Co-expression Network