vps37a (vps37a,LOC107656515,LOC107702331,LOC107747393,LOC107721427)


Basic Information

Item Value
gene id vps37a
gene name vps37a,LOC107656515,LOC107702331,LOC107747393,LOC107721427
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9799826 ~ 9805483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241164.1
ACGGGTTGTTTTCTTGCGAGCCCGTGTACTTCAGACAACAGCCTAATCTGTTATAGTGTTCCTAAAACtcaacatatgtttttttttagcagacaCGAGCGTCTCATTTATGTTTATCGTTCACTCGTTTAAACGGCTGTTAGGTCGCTACAGCGCTAAATAGGGTCGTAGCTAATGCTAATGGTGGCGTTGGGTATTTCTCgaatttctgtttcatttcatCAGGCCTCTTCAAACTGACACCACCGAGAGATTACGGCGTTAGTTGTCGTTTTGGCAGTCGAGAATGAACTGGATTTTCCCCCTGTCCAAGGGCTCTGGATCGATCCCTCCTCTGAACAGTTTACAGAaacaaagacagagacagatcgAGTCTCTCAAAGCTGCTCACTCCAACCTTGCAGAAATTCAGAAGGATGTAGAGTATAGACTTCCTTTCACTGTCAACAATTCAACTATTACTGTCAATAtCTTGCTCCCACCGCAGTTCCCTCAGGAGAAACCAGTGGTCAGCGTGTTTCCACCAGTAGGTCATCATTTAGTAGACAGTAACAATGGAACAATGGTTACCAGCCCGCTTATAACTAAtTTCGGAATGCATTCAGATTTAGGAAAAGTAATTCAGAGTTTGCTAGATGAGTTTTGGAAAAGTCCTCCTGCCTTGATGTCAGGTCCCACCTTTCCTTATATGTACAAACCATCGGGGATGCCTCCTTACCCAACTCAGAGCTTCCATTTTGTTCCTGCCTTCCCACCACAGGATGGTCAGCGGACTGTCGGCCCTGCCCCTGTGCCACATGCAGGGGTAGAGCCTCAACAAGCCTCTCCTCGACCAGCAGCACCCACTTATGGACTCATCACAGACCTTCCTCTTCCTGTACCAACCGCTGACTCACAGTCAGGTCTGAACGGACACATATACAGGATGCCTGAAATCCCAGATACATTTCCAGAACTGTCTGAGATGAGTAATTCTCAACTGAAGGACATGAGTGATCAAGACGACGTGCTCTTGGAGTTCTTCATGTGTCTGCCTCAACTCAAACAAGTAACCTCTGACAAAGAGGAACTGGTCAACAACATCGTGGAGATGGCCAAGAAGAACCTACAACTCGAGCCTCAAATGGAGAACAAGAGACAAGAGATGTTGTGTAAAtaTGAACAGTTAACCCAGATGAAGTCTGCATTTGAAACCAAAATGCAAAGACAACATGAGCTGAGTGAGAGCTGCAGTCTGAGCGCATTGCAGGCCAGATTAAAGGTAGCAGCCCATCAAGCCGAAGAGGAGTCCGAGGAGACGGCAGAAAACTTCCTGGAAGGAAAGACAGAGATTGACGACTTCTTAGCCAGCTTCATGGAAAAGAGAACGctttgccattGCAGAAGAGCCAAAGAGGAAAAGCTTCAGCAATGCATGAACACACACGGACAGTTTCCTACCACACATTAGATTGAATGTCCCAGAAAGGATCGGGATCAATCTACCAGCAGATATCGGTGGGCTTAAGACAAGCAGCACATCCTGTGACCTACAGCCTTGATTGGGCAAACCTAGATATATATACGGAAAAAAGATTTTGGCgtcattatttactgaaatcAAAGTGATTTTTGCACAGAATTTCCAATAGTGTTACGCTATCCCTGATTGAGTAAGAGCAGATGTGAATATGTCTGGATGTGCCCAGTCTGGCCGTGACCCAAAGGCTGTAATCAGAGGAAAGCAATCTGTTCTTAATAGTGTTCAGAAACAGGCTGAGTTCTAAGCTTATTAGTTCAGTTTGAGTTTATGTGACAAATGGGGTTGGGCCTTGTATGCACTTGAAgataaattttgaaaaatgttaatgctGCCGacaaaaacatactgtatttaataatgttgATAAAAGCCTTTATTATGATTAGACACtgtattatatgtttatttaatttgataggttaataaaacatttagaataatC

Function

symbol description
vps37a Acts upstream of or within locomotory behavior. Predicted to be located in late endosome membrane. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 53. Orthologous to human VPS37A (VPS37A subunit of ESCRT-I).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 37A isoform X2

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241164.1 True 1964 mRNA 0.44 12 9799826 9805483

Neighbor

gene id symbol gene type direction distance location
LOC122353686 NA coding upstream 2178 9797430 ~ 9797648 (+)
LOC122353681 NA coding upstream 3397 9796214 ~ 9796429 (+)
LOC122353673 NA coding upstream 4412 9795199 ~ 9795414 (+)
micu3a LOC107747394,LOC107656542,LOC107562929,LOC107721426 coding upstream 5630 9771041 ~ 9794196 (+)
tusc3 tusc3,LOC107702329,LOC107731701,LOC107554394,LOC106602198,LOC107391086 coding upstream 105540 9633719 ~ 9694286 (+)
mtus1b mtus1b,LOC107747391,LOC107656488,LOC107562915,LOC107721423,LOC107702266 coding downstream 21620 9827103 ~ 9863686 (+)
pcm1 pcm1,LOC107747390,LOC107721421,LOC107554391,LOC107702267 coding downstream 60681 9866164 ~ 9888659 (+)
casp3a casp3,LOC107754122,LOC107656460,LOC107562747,LOC107746030,LOC107702336 coding downstream 531202 10336685 ~ 10341208 (+)
helt helt,LOC107562737,LOC107656987,LOC107754167 coding downstream 560230 10365713 ~ 10367288 (+)
slc25a4 slc25a4,LOC107656452,LOC107562743 coding downstream 593853 10399336 ~ 10401667 (+)
G2149 NA non-coding upstream 12665 9784218 ~ 9787161 (+)
LOC122353659 NA non-coding upstream 737217 9061961 ~ 9062609 (+)
LOC122352814 NA non-coding upstream 746353 9051908 ~ 9053473 (+)
LOC122352408 NA non-coding upstream 768003 9030823 ~ 9031823 (+)
G1979 NA non-coding upstream 1057305 8740832 ~ 8742521 (+)
G2219 NA non-coding downstream 273402 10078885 ~ 10079470 (+)
G2246 LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191 non-coding downstream 567479 10372962 ~ 10373847 (+)
G2350 klhl2,LOC107591556,LOC107745059,LOC107702385,LOC107655955,LOC107750425,LOC107548347 non-coding downstream 1022202 10827685 ~ 10837245 (+)
G2352 NA non-coding downstream 1032142 10837625 ~ 10838465 (+)
G2354 NA non-coding downstream 1142636 10948119 ~ 10982967 (+)
G2125 NA other upstream 387389 9408405 ~ 9412437 (+)
G2063 NA other upstream 764226 9035086 ~ 9035600 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other upstream 1019662 8762139 ~ 8780164 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other upstream 1093953 8700440 ~ 8705873 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other upstream 1165427 8623158 ~ 8634399 (+)
G2230 NA other downstream 439674 10245157 ~ 10245578 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other downstream 451179 10256662 ~ 10335202 (+)
G2253 NA other downstream 591890 10397373 ~ 10398040 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other downstream 678157 10483640 ~ 10490084 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other downstream 1039473 10844956 ~ 10981356 (+)

Expression


Co-expression Network