klf3 (klf12,LOC107565970,LOC107656370,LOC107754179,LOC107702350,LOC107746019)


Basic Information

Item Value
gene id klf3
gene name klf12,LOC107565970,LOC107656370,LOC107754179,LOC107702350,LOC107746019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11310593 ~ 11324338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241280.1
gccCTTTCTCCCTCCTGTCTCCACCCTCACCTCCCGCGAGCGCCCGGCCCTAATCATGTGATAGACGCGCAATTCACTCAGGACACTTTAAACACTCGGACAAGAAGTTGTTTCGTAACTCTCGGGGAAGTTTTTTCGGCGTCAGCCTAAATGCTAGTGTGTCACTTGGATGCGTTTCGTGCCAGCGTGATCCGGGTTGTCTCCGTCGTCTGCGGTCCTTCGTAACGGCGCACTTTTCACTTGAGGAATATTTACTGACAATTTCCAGGATTTCAGTGGCAGCAGCCATGCTCAGGTGTGACCCaataaatgcagacatgtcaCTGACTTACCCAGCTTACCTGATTAAACCTGCATCTGAGGCGTTTGGAGTCGTGCTGTCCCCTTCCATGGTCCCTACTTCCACAGCTCACCTATACTCTCCTCACTACCACCCAGCACACTACTCCTACATGAGCCCCCCTCACACACACCCTCTGTCCCAGGATGTCCATCACTCCCAGAATGAACCTGTCGATTTATCCGTCAGCAAAAGATCCTCCGTTTCATCGCCTTCATCATCTCTGGCTTCATCTCCCAGAGCCACTCCACCATCTCCTTATGAGCTCCAGTCCGGTGTCACGTCCTCGCCCGGCTCCGGCTCCGGCTCCGGCTCTATAACAGGAAGCACTTCCGGGTCATCTCAGACAAGGCAGCTGACCCCACCACTGGCCCTTTCTATGCCTCCGGTTTTGACACCTATTGTACCAGTGCTTTCTATGCTGCAGCCGTTACCTGTGCTCTACCCTCCCCCCCTCCACCTGTCCCCCTCCATCATGATATCACCTGTCACACCGGAGGACCCTGCTAACCACAAGCAGTTCACTATATTGAAGTCAGAGAGTCCTCCAGACAACCATGAGCTCCTCAAGCCAATCAAAACCGAGCCCCACCCTGAACACGCTCAGGATTCCCACATCCAGGAAATAACCTCGCCCGTCAATACTGTCCTGCCGAATTATGAGGGAAACCCACACTCAGTGATTGTACGCAGGAAGGTAGAGTCTCCAGATCCGCTGAAGAAGCGTCGAATTCATCGTTGTGACTTCAACGGCTGCAACAAAGTCTATACCAAAAGCTCCCACCTGAAAGCTCACAGACGCACACATACAGgagagaagccttacaagTGCATGTGGGAGGGCTGCACGTGGAAGTTCGCCCGCTCCGATGAGCTGACCCGTCACTTCCGGAAGCACACGGGCGTCAAGCCGTTCCAGTGCCCCGACTGTGACCGCACCTTCTCCCGCTCCGATCACCTCGCCCTGCACAAGaagcgccacctgctggtgTGAGCACTGCGACGCACGGACGGAGCGGAAACTGCACCTTCGATTAAACCCTGGCTCAACGGGGAGCTTGATCTTCAGTGACGCCGAGGGCCGTGTTTTGCGTTTCCCGTCCCCATCCAGTTCAGGAAACGCTGCGTATCAGAAGAAAAGAGCGGAGCCGTCGGATCACACGACGACTAGCTCATGCTCCGTGAAAAGAATTAGCACCCAAGTGGATTTTCGCACCGCTACCACGGATACGGAGTAGCGCTGTAGATATGACCCTTAGATAAAACCGAATGGCAAGTCTTCTTCTTGATACCAAGCGTCCTCTCTTTCTATACGCGCCTCTCTCGTTTGATTTTGCCCTCTGCAGGTCAGAGGGCCCATTGTGCCAGCTACAGCACTACACAAACAAGCagaatacacacaaatatacaaaaaaacacagtttcacacttttaatgttgttttaagacGCAACTCGGGTCAAACCTGCACAAtgtgaattagttttttttctttttttctttttctatattGTTTGCAAAAATGAATGTGTATACGTAGATCCTGTATATGTATtcggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcatgtttCAGTGTAAGGACCAAAGCTGATTGTCTCGCACTCTCATGTATTTTCTGAGATTGTTTGATTTGGGTCGGTCAGTTCATACCAagaatgataactataaagatgactagataataataactaaaatagCGTGCTCCCCATTGCACGGTAATTATTATTAAGCGCGCATTGCGGTCATCtgcattgtattatatttgcagactctgttttttttacattttagaccTACGTCTTTATCGTTTATAGTTATTGCCCTGGGTATAAACGGGCAAGTTGTGACAAAAAGTTTTTGGTTCCAAAAGTAGCTTCGGAGCACCTGACCTATTACGTACCTAGTAAAACATTGGcgtgttttattaattgtaatcaTGAATTAATACTGTAGTTTATTACCGTAAGTACTATGTACTGTGTAAGTTCTTGCAACTATGCACATGCACAATTTATGATTTAGTAGTGAAATGATAGTAACGATTTTACCCTACATAAacgcatttaaaaatacaggtaGAAAGTATGCGTGAAAGGTCAAAACGGTGTCTTAAATCTTAACAGGCCGCTCTGAAAACTGAACAGTCGATCATCCAGCGCATACTTGTTAGTTGCAAGGATTTATAGGAAGCTTAATTTTGCTTAATCTCACcattattcatatttgaataatttctgTAATCACGAATATTCATATAATCCTAAATATTTCGTTGCGTCGTGTTGTATCAGATCCAGCGTCCAAGGCTCAAAAgggtaaaatgttatttcactGAGGGGTGTTTAGGTGGAGAAATGTGATAAATGTGAACCATTCAATAaggggcattattttattagagTGAGTTCATCTAGGTTATGGGTAACATTGTCTTACTGCTAACACTTTGTGAGATATTTGTTATGTAATTATGGATGTATGCAGGGACGAGTGTactcttgtttttctgtttgtaggttttgcaaatcattttttcgtgaacaaatgtttgtaaaggGCAACGTGTAAACGGAAACAGTGCACTTTAAAACAGATCTGAAATGGTAAATATCTGTAAATGGGAGGCCGTGAATAGCTTTAAGCTTTGGGCTGTATCtctgtatttttctctttctgctcGAACAGCAGTTCAACAGTTTGCAATAGACcggtttctgttttttttttttttcttttctcttctcaaCCGAAGGACaattttgaagaacattttgaaGGAGGAAAAGAACAAGGGGGAGCTTAtatgagaaaggaaaaaaaagtccttGATGAAACAATTGAGATgagtcaaagaaagaaaaaggatgAAGCGTTTGTTTCTTGGTCTGATGTATAAACCGCAGCAAAGCTGTACTACACGTCTTAGAAATAATCAGATAATGGAAATGTTCATATGCATACGTACATATAGATCgatagatatgtgtgtgtgtgtgtgtgtgtgttttttaaatggaatGACTGAACGGGCAATTTATAGAAAGCAtgattatgatatatttttaatccaaaacaaatatatgtttttataaagatgtgaatcttctgtttttttctaaattacttACGTTTTCACAGTTCAAAGGGAATATTATGCTGTGTCATTATATCAAACTGtgaatttaatacaaattgTGCAGACACTTTTTGTATTAGAAATATGTATCATTCAATAAACTTTTTATGgtgaa

Function

symbol description
klf12 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: Krueppel-like factor 3

GO: NA

KEGG:

id description
K15605 KLF3; krueppel-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241280.1 True 3621 mRNA 0.44 8 11310593 11324338

Neighbor

gene id symbol gene type direction distance location
fam114a1 LOC107754137,LOC107656378,LOC107702351,LOC107746018,LOC107591522 coding downstream 471 11302481 ~ 11310122 (-)
LOC122347963 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding downstream 324574 10982094 ~ 10986019 (-)
LOC122347847 kdm4c,LOC107655842,LOC107709452,LOC107548355,LOC107750465,LOC107570226 coding downstream 504462 10800296 ~ 10806131 (-)
sorbs2a sorbs2a,sorbs2,LOC107746024,LOC107562741,LOC107754131,LOC107702341,LOC107656785 coding downstream 838646 10425765 ~ 10471947 (-)
pdlim3a pdlim3,pdlim3a,LOC107754177,LOC107656980,LOC107746050,LOC107702342 coding downstream 887052 10418632 ~ 10423541 (-)
tbc1d1 tbc1d1,LOC107754138,LOC107656363,LOC107702353,LOC107746016 coding upstream 12221 11336559 ~ 11382357 (-)
pgm2 pgm2,LOC107551595,LOC107591526,LOC107746017 coding upstream 59453 11383791 ~ 11393826 (-)
phox2ba LOC107551569,LOC107754147,LOC107656929 coding upstream 165614 11489952 ~ 11492033 (-)
trnai-aau NA coding upstream 173947 11498285 ~ 11498358 (-)
rbm47 rbm47,LOC107656158,LOC107754149,LOC107702361,LOC107746010 coding upstream 284223 11608561 ~ 11631643 (-)
G2532 NA non-coding downstream 111785 11198578 ~ 11198808 (-)
LOC122347981 NA non-coding downstream 303689 11004773 ~ 11006904 (-)
G2391 NA non-coding downstream 311508 10998334 ~ 10999085 (-)
G2381 cpe,LOC107548348,LOC107745061,LOC107591555,LOC107750458 non-coding downstream 444545 10861565 ~ 10866048 (-)
G2377 NA non-coding downstream 471291 10837968 ~ 10839302 (-)
G2630 NA non-coding upstream 387635 11711973 ~ 11712523 (-)
G2631 fbxo10,si:dkey-245p14.2,LOC107702368,LOC107591540,LOC107750413,LOC107656048,LOC107754157 non-coding upstream 389106 11713444 ~ 11715227 (-)
G2632 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107754157,LOC107591540,LOC107702368,LOC107750413 non-coding upstream 391795 11716133 ~ 11716935 (-)
G2634 fbxo10,LOC107754157,LOC107656048,LOC107702368,LOC107591540,LOC107750413,LOC101884743 non-coding upstream 395390 11719728 ~ 11720175 (-)
G2635 fbxo10,LOC107656048,LOC107754157,LOC107702368,LOC107591540 non-coding upstream 395963 11720301 ~ 11721030 (-)
klhl5 klhl5,LOC107565971,LOC107754136,LOC107746020,LOC107656383,LOC107702349,LOC108412945 other downstream 17545 11242031 ~ 11293048 (-)
G2401 NA other downstream 256652 11053154 ~ 11053941 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other downstream 329227 10953875 ~ 10981366 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other downstream 496518 10806569 ~ 10814075 (-)
LOC122347930 dnah6,LOC106610484 other downstream 510984 10734970 ~ 10799609 (-)
LOC122343263 NA other upstream 71396 11395734 ~ 11396576 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other upstream 83227 11407565 ~ 11411713 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other upstream 186101 11510439 ~ 11512833 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other upstream 189813 11514151 ~ 11580717 (-)
apela NA other upstream 459291 11783629 ~ 11788666 (-)

Expression


Co-expression Network