sorcs3 (LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478)


Basic Information

Item Value
gene id sorcs3
gene name LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23684795 ~ 23732246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241366.1
GAGATAGATCTGGTGCACATGGAGGCACACACTCCTGAAGGCCATTGTCAGTATGTGACATGCAGAGCTCAAGCCTGCTCTGAATCCAGTAGGACATATCCATTTTCTGGCTATATTGAGACCAATTCGCTTGTGGTTCAAGATGAATATGTGTTTGTTCAGgTGACGACCACTGGCAGAGCAAGCTATTATGTGTCCTATCAAAGAGAAGCTTTTGTACGCATTAAAATCCCCAAATACTCCCTGCCCAAGGACATGCATATCGTGAGCACAGATCAAGGTCAGGTTTTCACCGCCGTCCAGGAGTGGAACCAGAACGATACCTACAACCTGTACATATCTGACACTCGTGGCATATACTTCACCTTGGCTGAGAACGTCTGGACTAGCCGCGGGCTCGGAGGCAACAGCATGATCGACCTTTACGAGGTAGCAGGGATTGAAGGCATGCTCATCGCTAATAGGAAGGTGGAGAACCAGGTGAAGACGTACATTACGTACAACAAGGGCCGGGACTGGAGGCTTTTGCAGGCGCCCGCTACTGACCTGGCAGGAAATCCTATTCATTGTGTGCTGCCGTTTTGCTCGCTGCACCTACAACTGCAGATGTCAGAGAACCCGTACCTCGGCTCCATCTCCACCAAGAGCTCGGCGCCGGGAGTCATCGTGGCTACAGGAAATATTGGCTCTGAGCTGTCTTACAATAATGTGGCGATGTTCATTTCATCAGATGCGGGCAATAACTGGAGACAGATTTTTGAGGAAGAACACAACGTGTGTGTTTTGGACAAAGGTGGAGCTTTGGTTGCCGTGAAGCAGCCCACTGTGCCCACCAGACATCTTTGGATCAGCTTTGATGAAGGTCGTCAGTGGACACGTCACAGTTTCTCAGCCATGCCGCTGTTCGTCGACGGTGTTCTGGTGGAGGCAGGTGCAGAAAATCAGATCATGACGTAAGTTTTTGGGCACTTCAGTCATCGTTCTGAATGGCAGCTTATCAAAATTGACTACAAATCCATATTTACCAGAAGGTGCACAGAGGGGGACTACCAAACCTGGCACCTGCATAACCAGgGTGAGCCGTGCATAATGGGTCAAAAGCAGATCTACATGAAGCGTCGTCCTGGAAACTACTGCATGGTGGGATGGGACAACTCCAGGATCCTGTCTGCAGAGCCCTGCATTTGCAGAGCGCACGACTTTGAATGtgattATGGTTTTGAGAGAAGAGGGGATGGAAACTGTTTGCCTGCGTTTTGGTTCAACCCTTCCACGTTGTCTCGAAGCTGCAGCCAAGGGCAAAACTACCTCAACAGCACAGGGTATCGTAAAGTGGTAGCGAATAACTGCACGAAAGGAGTGAAGGAGATGTACACGGCCAGGAAACAGCAGTGTCCGAATCGCCCCCCGCGAGGTTTAGTCCTGACAACCCGTGACGACAAATTCACAGCCAACATGGGCAGCAATGTGACCTTCCTGGTTCGCCTAGAGGAGGGCGACTCTATGAGGACAAACATTCAGCTGGACTTCGGGGACGGTACGGCCGTGTCCTACTCCAACCTGAGCTGGACGCAGGAGGGCATCCGACACGTGTACCGCAGCGCCGGCATCTTCAGAGTCACAGCGCTGGCGGAGAACAGCCTCGGGTTCGACACCTCATCCCTCTACCTGCATGTGACGTgcccCGTGGAGCATATTCAGCTGCTGGCTCCGTATGTGGTCATTAAGAATAAAGAGGTGAACCTAACAGCAGTGGTCTGGCCTTCTCATTTCAGAACGCTCACCTATTTCTGGTGGCTGGGGAACAACACGGAGCCCATAATTACGTTGGACAGCAGTATTTCCCACACGTTCAGCACCGAGGGCATGGTCACCGTCACTGTTCAGGTGTCATCAGGAGACTCTATACTGCAGGACACCAGAAACATCGCCATACAGGAATTCTTCAAATCGcttcttttatctttctctcCTAATCTGGACGAGGCCAACCCCGACATCCCGGAGTGGAGACAGGATGTGGGTCGGGTAATTAAGAAGGCTGTTCTCCAAGTCGCTGACATCCCGGAAGAGCAGCTGCTGGTGGCCGTGTTTCCTGGCATCCCGACAGCGGCCGAACTCTTCCTACTTCCTCCCAGGAACCAATCGGATGGCAGGAAACGGACAGAGGAGGATCTGGAGCAGATTTCAGAAATCTTGGTCAACGCACTGAATCAGATCTCTGTGGAGTTCGAGTTGAAACCCGGCTCCCGGGTCATCGTTTACATCACGCAATTAACTTTAGCTCCACTGGTCGACTCCATCCCGAGACACAGCAGTTCTGCTATGCTGATGCTTCTGTCTGTGGTGTTTTTGGGTTTAGCTGTATTTCTCATCTACAAATTTAAGAGAAAAATCCCTTGGATTAACATCTACGCAGAGGTGAACCACGAGAAAGAGCAGGAGATGATCAGCACGGTGGGCCAGAATGACGCCACGCCAAAAATCACCCTGAGCGAGTTCTCTACCCAGAAAGAATTGATGGAAAAAGAGCTGGAGGCCCGTGCCAAACGCGGTGTGATCAACACCTGCGAAAGCACAAGGGAGATCCCGAACTGCACGAGTGTCTGAAAACGtcaagaaagaaggcggaggcATATTGTAATAATGTGTACAGAGGTATCACAATTTTAAAGGGTGACAGttttcctttttgctttttttgtaatttcaaaaCACTGTCATTGTTAATAGTTTTCTAAGGAGCTCAGATTTGCATGGGTGTCTTGTTTGTTACGATCTGTGTGGAAAATAAGAATAGATTTAACTACTGAAAACATGCCTGGTTGAGAAATTAGGATTATTTACCAACAATTCCAAATATTTTGTTCTGAATATTGCAGAACAGTAAAGCGTAAGGGAAAGTCGGGGGGGGAAAGCCACTTTTCCGatgcattttttcttattaatatatttgtcgGTTTATCAGTTAgttagaggggaaaaaagtggCTTTtactatcaaaaaaaaattttttttgtttgggtcAGAACTTATTTATGCCAAGTTCTTTTACCTGTTCGAACCGATTTTTCACACATTGTGAAGAGTGCATTTAGTGACTATATTAACTTAATTCTTAGGTTTTTAATCTCTTCAGTAGGTCatctcatttttatatttgtcataACTTGAACCGAGGGAACAAAAATTGCAGCtgaagcatgcaaaaaaaaagccaacagTGTTTATATCCCTCTCTATATTACAGCTTTGCCTTCGCGTAAGCGATCTTGCTCCGCATTCTTCTAAATTGGTGGTTGTTGAAACATTTCGacttttaattacacatttatctCACTGATCGAGCCGAAAAAGATACGGACTAAAACGTGAATGAAGTGAGATACTTTTCCAGAAGCACTGTGATAAAATGTCAATTTGAAGGCAAGCTTTTTGTACTTCTATAAAACGAGAATATACGGTAACTATCAAGAATCACATCTCTATAGTAAAGCTTTTTTTGGAGCTCGAACTTAGATAAAATCCATGAAATATCAAACGTTGAGAATGTTTTGTGGAATAAATCTCTTGATATACATCCATGGAC

Function

NR:

description
PREDICTED: VPS10 domain-containing receptor SorCS3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241366.1 True 3590 mRNA 0.47 28 23684795 23732246

Neighbor

gene id symbol gene type direction distance location
cfap58 cfap58,LOC107746299,LOC107583211,LOC107659560 coding upstream 408027 23205389 ~ 23276768 (+)
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding upstream 537495 23064152 ~ 23147300 (+)
stn1 obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065 coding upstream 621445 23059632 ~ 23063350 (+)
trnae-cuc_5 NA coding upstream 625692 23059032 ~ 23059103 (+)
lrrc58a lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937 coding upstream 626639 23054530 ~ 23058156 (+)
caly caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014 coding downstream 451835 24184081 ~ 24192107 (+)
msx1b msx1b,LOC107569049,LOC107675944,LOC107706889,LOC107684328,LOC107583240,LOC107729361 coding downstream 483565 24215811 ~ 24218006 (+)
taf5 taf5,LOC107676012,LOC107574147,LOC107583167,LOC107684290 coding downstream 510448 24242694 ~ 24250298 (+)
pdcd11 LOC107729346,LOC107676223 coding downstream 519107 24251353 ~ 24265835 (+)
LOC122341621 LOC107729353,LOC107574144,LOC107577677,LOC107675842,LOC107684284,LOC107583168,LOC107706779 coding downstream 547271 24279517 ~ 24281818 (+)
G5554 NA non-coding upstream 191156 23492614 ~ 23493639 (+)
G5553 NA non-coding upstream 193236 23489116 ~ 23491559 (+)
G5548 NA non-coding upstream 213265 23471270 ~ 23471530 (+)
LOC122350307 NA non-coding upstream 502364 23181003 ~ 23182431 (+)
LOC122350314 NA non-coding upstream 530494 23153734 ~ 23154301 (+)
G5584 NA non-coding downstream 6359 23738605 ~ 23739857 (+)
G5605 NA non-coding downstream 300645 24032891 ~ 24231752 (+)
G5611 zgc:154142,LOC107594422,LOC107676135 non-coding downstream 360015 24092261 ~ 24093714 (+)
G5606 NA non-coding downstream 432947 24165193 ~ 24168695 (+)
G5650 NA non-coding downstream 555447 24287693 ~ 24295237 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other upstream 130170 23543064 ~ 23554625 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 833402 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 2049743 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 2064203 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 2323355 21321462 ~ 21361440 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 551236 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 824551 24556797 ~ 24558929 (+)
G5817 NA other downstream 971602 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 1251800 24984046 ~ 25398340 (+)
LOC122349019 gstcd,LOC107757010,LOC107729368,LOC107676029,LOC107594450,LOC107684312 other downstream 1410264 25142510 ~ 25185475 (+)

Expression


Co-expression Network