stra6l (stra6l,LOC107564087,LOC107665941,LOC107692609,LOC107758896,LOC107557952)


Basic Information

Item Value
gene id stra6l
gene name stra6l,LOC107564087,LOC107665941,LOC107692609,LOC107758896,LOC107557952
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7731788 ~ 7738618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241502.1
TATCCTGGTTCATGAAGTGAAAGCTTTACTTCATATCGTAGAACATTGGGACTAGAGTTTGTTATGAAGGAGAGCAGCTTTATGGTCTAAATAGTCTGCCTATAAGCGACCTCCACCAGCAGAACGGGAGTCTTTGGAAACTTCAGACATCATGGAGGAATGTCAAAATGGAATGTCAGTGGATTTGTTCCTGCATTGCTCTCTTGTTCCCGCTGTATGCATTGTGTTTCTGCTCTCATTTGTACAACACAGAGCAAGGGCTCAGCCCTTTGAGGATCGCTTTCCATATCTCAGGGGTCGATTTGGCATTGTGGTGCCGTTGGATTTCATTTGCAGTCTAAGTAACCGATGGTCTTATGGTTTCGCATTTGGAGCTATTGCTCCCAGTGTGATTCAGCTTTTCTCTGAGTCCTATACACCATTTACTGTGCCTAACTGGGCTAAAGCCATTGTGTACCTGGTAGGAGCAATAGAAGTTGGTGTGGCCTACCTGCCTTTCTTTGCTTGTCTTTCCACACCGCACCGATTACTTGGAGGGGTTTTAGGTCTTCTTTACACACTCACATGGCTCATTGTGAGACTGTATGACACGATAAGCTGTCCCTCTGGAAGGATTTTAGGTTCTTACGAGAAATTGATCATCATGTGGCCATTCTTCCTGTGTCTGTTTTTCCTGCTGGGACGGTTTGTGTATATTATAGTGAAGGCTGTAAGAATCCACCTGCAGCTACTAACTGAAGAGAATGAAGAGGATCTAAACTTCCATCAGTTCATATATGTACAGACTCTACTGAGACGGCCCCCTGAACGGCCAGAAAAAAAGAGTTGGTTTCGAAGGAATGTGTACGACTGGGATCCTCACTTTAAATTCCCCAACAGAATGATTGGCACATCTATCATCTCTATTATTGGCTTGTACATGttgACCCTAGCAGACTACAGCTTGAGTGACTACACCTTTGACAGACTAGATACTTTGATAAACTCACTTGCAGACATTGCATCATCCTGTAATGAAACAGACAATGTGTTCACGTCACTCATTCCCAGGATGAAGGAGTTTAGTTTCGTAGCAAGAAGGTCTTGGTTGGCGACAACTATTTTTTCCACTCTGACATCTGTTACTTACACTTTTCACGTTCTAGTATGTTACAGGAAACATTTAAAGAGGCTGTGGAGGGGACAGAAAGCGTTTCTTCCAGAGAAGTTCCATAATCCAAGCCCGGCCGTTAGCGTAgctgCTATAACAAGATATTCAGGCTGGCAGATTGCCTTCACTATGTGGGggttTCTGATAGTTCACTTTGTGCAGTTTCTGTTTGCCTTGCTGTTTGTGTATGGAGTCGTTCTACCGATCCAGAAGGGGCACTTTCTCAGCTGGCTTTCTAGTGTAGGCATCATTCTGCTGACAATACTCTTAGTGATAGCCTTGGTGATAGTGCAGATTATTCTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCAAACCTGAAGACAAAGAAAAGCCACTTGCACTCAACAACAGAAAAGCCTTCCACTGCTTCAActactttttcttcttctataaTGTGATTATGGGGTTGAGCAACTGCATTTTGCGCCTGTTAAGCAGCTGCGTTGTGGGTACGTGGCTGGTGTCACGCATTGACCGGACCATCATGCAGCGGGGCTATGAATCCATGGATCCAGGATATAGTACGTGGATTGGGATGATATTTGCTGATCATTATCATAGCAACCCAGTTATGGTGTCTTTCTGTCATCTGCTGCTTGGCAGAAAAATGGAGAAACAAGGAGCTGCAGTGCCCTCTTATGCAACCTTTAGCAACAACACAGGATGTTCAGTAGGGGGAAGAGTACGTGTGCGCTGGCTCCTGCTGTACACTCTGCTGAGAaaccctgcactcatcctcctgagaaagagaaaaaagctgAACCCAAACGACAGCCAAGACCCACTCCTCTTTGCCCGAGCCATCACCTCACAGGCTCAACAAGCAGCTGAActggaaaacaataaaactgcagAAACAGAACCAACGCAGTCAGACATCTGAATCCGGTTCCTCAGTGTGAACACAGGCTGCTTGATTTAAAATTGGAGTTCTGTGTCTTTGACTATTGCACTACTGACAAAATTAACCTGTAGGGGATATAGACTTTGCTTTTTGATACGACGGGCAAGAATGAGAATCTGCTTCCTTCAATACGTAACTGCACTCATCAAAGCCACCACATGTGGCCTTGAAGACTGAATTTTACCAGAGAACTGGAGATTATACATTCGAGGTCTAATGGTTTTTGTGAGCTTCTGAaacaaatttgaatttgaattacgTGTTTGTTGGTCAAATAGTGTTTTGTAATAAAGAATGTGAAAgctt

Function

symbol description
stra6l Acts upstream of or within several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and retinol transport. Located in organelle membrane and plasma membrane. Is expressed in digestive system; endodermal cell; somite; and yolk syncytial layer.

NR:

description
stimulated by retinoic acid gene 6 protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241502.1 True 2383 mRNA 0.44 18 7731788 7738618

Neighbor

gene id symbol gene type direction distance location
LOC122343081 LOC107723175,LOC107692611,LOC107565010,LOC107665966,LOC107758893,LOC107557956 coding upstream 27657 7696411 ~ 7704131 (+)
xpa xpa,LOC107758894,LOC107565010,LOC107692611,LOC107557957,LOC107723178 coding upstream 40861 7687375 ~ 7690927 (+)
saraf LOC107758892,LOC107557959,LOC107665975,LOC107692614 coding upstream 47187 7680870 ~ 7684601 (+)
slc24a2 slc24a2,LOC107692616,LOC107758891,LOC107665969,LOC107564132,LOC107557960,LOC108441320 coding upstream 51416 7663335 ~ 7680372 (+)
tspan5b tspan5b,tsn5,LOC107692617,LOC107557938,LOC107758863,LOC108441323,LOC105893813,LOC103360687,LOC104950293 coding upstream 71256 7651722 ~ 7660532 (+)
tdrd7a LOC107723197,LOC107692608,LOC107564078,LOC107557954,LOC107665979,LOC107758895 coding downstream 148 7738766 ~ 7749449 (+)
tmod1 tmod1,LOC107665961,LOC107692607,LOC102782831 coding downstream 10978 7749596 ~ 7761949 (+)
gne LOC107665959,LOC107723184,LOC107692604,LOC107758846 coding downstream 36193 7774811 ~ 7792042 (+)
nansa nansa,LOC107723182,LOC107758866,LOC107692601,LOC107665955,LOC107557947 coding downstream 54030 7792648 ~ 7796560 (+)
clta clta,LOC107723183,LOC107564055,LOC107692603,LOC107557948,LOC107758902 coding downstream 58538 7797156 ~ 7804962 (+)
G1732 NA non-coding upstream 23657 7706885 ~ 7708131 (+)
G1698 NA non-coding upstream 83164 7647889 ~ 7648624 (+)
G1697 NA non-coding upstream 103477 7624948 ~ 7628311 (+)
G1706 NA non-coding upstream 125288 7598267 ~ 7606500 (+)
G1677 NA non-coding upstream 149698 7513555 ~ 7582090 (+)
G1751 NA non-coding downstream 67087 7805705 ~ 7806252 (+)
G1752 NA non-coding downstream 68733 7807351 ~ 7808014 (+)
G1750 LOC107692600 non-coding downstream 69685 7808303 ~ 7809221 (+)
G1753 NA non-coding downstream 72365 7810983 ~ 7811354 (+)
G1754 NA non-coding downstream 73535 7812153 ~ 7813651 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other upstream 10363 7720265 ~ 7721425 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 579568 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 871518 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 886240 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 949647 6771486 ~ 6782141 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 216093 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 868207 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 884540 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 961822 8700440 ~ 8705873 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other downstream 1023521 8762139 ~ 8780164 (+)

Expression


Co-expression Network