LOC122346953 (pcdh8)


Basic Information

Item Value
gene id LOC122346953
gene name pcdh8
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14490784 ~ 14498314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241916.1
TTCATGTTTGTGTATCCTTAAACACGTTTACACACACAGTTTTCTACTGACCTCTATGGGAATCTAGCTTGTATTCTTTTAGATGCCAGTTCTGTGCTTGTAAATTttgacaaaatgtcaaaatgtcatgtggtgcgaCCACTGCAGTTTGTTTTCCACTTTGTTAAATGTCCCAGATTGGCAGTTTGTGCTTTTATATTCAATTTACTGTCTCTGCAAAATGAGAAAAACGCTCATAAAAATTTTGAGTATGTCATTTTAGTTTGgtaattgtgcatttattaattatatattatatatttattatagaacTATTTGAATCTATTTGACCAGATTCTACTGCCAAGAAAAGTGAAACGAAAAAAGTGCAGTCAAGCACATACTCCTGAGATTTTCCACTGTAAGGaagatgtttatgatttcaTCTCCGAACCTGAGCCAGCAAGCACTCTAAAACACCTCTCACAAACACTACGGCACTTTTATGCAACGCGTCATGTTCTCATGTAGTGAAAATACATGACAGTAATTAAGCAAAAGTCTGAGAGTTGAACTGTTGCCACTATTGCCAGACAACAAATACTGTTTTTTGGCTCTTTAATTTGTCATGACAGCTTGCTGCAGCACCTCAGTTCAAGCGGCAGGTGAACCAATcatttcttataaaataaacatgaataaacatcagAAGGCCTTTAGATTTGTAATGCTAATGCTTCGTGGGTTTTAGTGTATAGGCTACCTATAAACTGTGGTTTAACACTTATTATGAGCGTAAAGAAAAACATGTACAGCTATTAATGGTAGTAATaatgaaaagcattaaaaactgatttcaaCTATGGTAATGTTTCAGATAGCTACAATTGGAACGGAcgtaaaacatgaaatataggTATTACTGAAAAGATAATGTGTTTAAGTAATTACAATTATCTAAACTATTagataataactattattagaTAATAACTATTATCCCcaagcacttttatttatatttatagatatgtaGTCAGACTTAATAAACTACTTAGACTTGTCTTAGAGTTATTCGtctatttttttcccttaaatgCGGCTAAAACCAGTCCTTAAGATAGTCTTAACAAAGAGGCTAAGTTCATGCAACCGGCCCCCAATTCACAACCTGTAAATATCAGAGTATCATATGATCATTTTAGTTTCAATATTATCTTTAAAAGGTGAAAATATCTCTCGCCTAGATCGTAGTAGTGACAGATGGATATCAACCGATTCTTTGTGGCTCAGTTAAATGGCAAGTGTTGCTCAATGAAGGGGAAACAAACGAGTGTGAAAATCTCTTAAATAGCCGTGAAGAACTCATTTACACtttaaatgcgttttaaaagcagctttaagTAGAGGGCGATTCATTGGCCGGCTTAATTTATTCAAAGAAGTGCACATGGCGCTTTGCTGAGAACTCCGGGAAGTTGATCTCCCTCCGTCTGTCAGTGCTAAAGAGCGCGCCGACGTCGCCATTGGGGAACCCCACTAAGCCATTGTATACTTGTGCCTAACGAGGGGTTCATAAGCCTGCGATATAATCCGGCTATAGAAACCCCTTTTAATAAATATCCCATCGCTTCGAATAAATCCTATTTAAAAAGGACCTTTACACCTGCCACAGCAGGCGAGATCGCGGAGAAAAAAGCCTCGACGTCACTGATGTGCGCGCTAAACAAGATCCCGCACGTGACGCGCAGTATAACGCGTATCATTGCCATAAGTATGCTATGTACGTACGGCGATCGAATCAAAAATGACCAATGGTTGTTTTTAATCCGATGACTTGCAGCTGTAAGCTACTGGTTTAGTAATATAAACTGGTTTAGCTCAGTAATCAAGTaccagaattaaaatatatctacaTTCTCTAAGTTTCTAACACAGAAGCGGTGCAAGCGCACTGGCATGAGAGCGTGTGATTTATGGTGTTCCTTAACGAGCTTAGACGTCTTCTAAAAGACCTCCTTTTGCGAGCAGGGATTGGTCACACTCGATCTCATTTGCATGAAGATGTCTATAAAGCACCCAGGCGCTGCAGCTCAGCCGAAGCGCGCGCGGAGCCCGGTATGACCGGAGGAGAAGCTGGACAGCCGTCGCTTTAAGTTGTTCCTCGGTTTAAGTTAGCCTGCGTACAGCTGTGAACCTTGACATCATGAGAGGGGCTTTTAGCGGTCGGGTTTTGTGGCATTGGTGGACAGCGCACGTCGCGTTACTGTCTTTCCTGTCCACTTCAGCAGCGGGAATGACCATCAAATATCAGATATACGAAGAGGACGCTCTGTCCACTGTCATCGGAAACCTGGCGACGGACACGGCCTCGAATCTGTCAGATGGCTCTAAGACCGGTTTCAAAATGATGAATCGGTTCAATGCGTCTTTTATTAGACTGCGAGAAAAAGACGGACAGCTAACGATAGGAGAACGAATAGACAGAGAAAAAATATGCAAGCATACGATCCGGTGTCTCATTGCTTTCGACGTTGTGAGTGTCTCGAATGAGAAGTTTAGATTGATTCACGTCGAAGTGGAAGTGAAGGACATCAACGACCACGCTCCGGTGTTCCCCAGGAAGGAGTGCACGCTGGAGATCTCCGAAAATGCAGCGCTCGGCACTAGAGTCCCCTTAGACGTCGCCGCGGACGAGGACGTGGGCTCCAACTACATACAGAGCTACCAAATATCAGTGAACAGCCACTTTACCATCGACGTGCTGAGCAGAGCTGATGGGGTTAAATATGCAGAGTTGGTGCTGCTGAAAGAATTAGACAGGGAGACGCACGCCTCCTATGTTTTGGAGCTCGATGCAACGGACGGAGGAAATCCACCGAGGTCCAGCAGCACGAAAATCAACATCAAAGTAAAAGACTTCAATGACAACAGTCCCGTGTTCGACCGGAACGGTTTTTCGGTCGATGTACTGGAGGACGCACCGGTGGGATTCTTGCTCGTGGACTTCAACGCGGTGGACCCCGACGAGGGTTTGAATGGGGAGGTCGTGTACGGCTTCGGGAATCAAGTGCCTTCGGAGATCCGCCAGCATTTCAGCGTTGACCGAAAATCCGGGCGGCTGACCCTCGAGAGCCCGTTAGATTTCGAGAGCAAGAAAACCTACGAGTTCGATGTACAGGCATCCGACCTGGGTCCTAACCCGATCCCGTCCGTCTGCAAAGTGGTTGTTCAAGTGCAGGACGTGAACGACAACGCACCGGAAATCGCGATCACCCCCATGACCTCAGTCACCGCGGGGATAGCGTACATCACGGAGGCTGCTGCTAAAGAGAGCTTCGTGGCTCTGGTCAGCATCTCGGACAAGGACTCGGGCGCTAACGGAGACATCCACTGTACCCTCTATGGGCACAATCACTTCAAACTCCAGCAGGCCTACGAGGACAGCTTTATGATTGTAACGACGTCTTCGCTGGACAGAGAAAAGATTTCAGAGTATAACCTGACTGTTGTAGCCGAGGACCTGGGATCGCCTCCGTTCAGAACAGTTAAGCAGTATACTATAAGACTGAGTGATGAGAACGACAACGCTCCTGTGTTCAGCAAACCGGTCTTTGAGGTCTCCTTGATGGAGAACAACGCTCCGGGGGCATACATCACTACTTTGGTGGCCAGAGACCTTGACTTGGGGCAAAATAGCAAAATCACCTATAAGCTCATGGATGACAACATCATAGGCTCTCCGGTGTCGAGCTTCGTCTCTCTAGACCCCTCTTCTGGCTCTCTGTACGCGCTCAGAACTTTTAATTTCGAGGTCCTCAAACAGCTGCAGCTGCGCGTTCAAGCGAGCGACGGGGGCGCGCCGCCGCTCCGAAGCAGCGCCGTCGTTCATCTTAAAATAGTCGATCAGAACGACAACGCTCCGTCCATCACGCAGCCCGCGCCGATCAACGGTTCCGCGGAGGTCCTGCTGCCCAAAGACGCGCCCTCGGGCTCCGTTATAACGCAGGTGCGTGCCAGGGACGCCGACGAAGGCGTCAACGCGGAACTGTCGTTCGGCATCTCCGGAGCTGTCGCCTCCGAGTTCTCCATAAACAGCGCCACCGGAGAAGTTCATCTGAATCGTGAACTCAGCCGCGACTTTTACGAAAACCCGAGAATAACGGTAACCGTCAGCGACAACGGGAGACCTTCCCTGACCGCGACGGTCACGATCCACTTCTTGATAGCGGCGTCTCTCCCGAGTGGACGCAGGCGCAATGTGTTCGCGCACAAAACAGTCGAAGAGACCCAGGAGGGGGATCACTCGCTCATTATAATAGTCGTGCTGGCGGGAAGCTGCGCGTTTCTGTTTTTAGCCATTATCATAATAGCGTCCACTTGTAATAAGCGGAAGGCGGACAGTCGCGGCCATTCTGGAAAGGAGGACGGCGTTCAGGGCAAGGGAAACCACATCGACCCGCTTATTTCGGTTCACAGTGACATCGTTTTCGATATCCACCCTTACTCGAGCGCCACGACTTTTCCCGGCTTGATCCAGAGAGGCAGCTCTGAGGACAGCGCGCGCGTCTCTGAAGATGGCCCGCGTGACCCGGAGGACGAGGGGTTTTCCGCTGTGCCTAGCTACGGCAAAGACGCGATGAGACAAATGAAAATTTGGAAAGGCACCTCGTACGCGACCATATCAGCTCGAGAGCCTCACAGCGGAAAGGACAGCGGGGTCGGAGACAGCGACTACAACGACAGCGATTCAGATACAAGCGGCGACGGCTTGAGGAAAGACGAGCATCAGAGCAGCAGTCAGGATGgtCTCTGGGCATGTACAAGTGAGTGTAAGATTTTGGGCCACTCCGATCACTGCTGGAGCCCGACCGCTTCCAGGACCGACTGCAGTCTAACACGCTCATTCGCCAAGTCAGGTTCACCTCCACAAGACGCTCTCAGGAGAGAAAACTACAACCAAGCTCACATTCCAAAAACTGTGGGACTACAGAGCGTCTGTGAGAAAGTATTACGTAGAGAATACGactatatataaacagttcATTTCACAAACCTCTAACATGATTTCAATACCCTTCTAAAATGAACCAAACCAGCTAAGATGTTCACACAGCCGGCTGATCTTGCAGAGAATAATTATTTAAGCCTTTTTGTACATactgaacatatttttataatgcaacagatttttttgaagatgatatattttgattaaattatatagcctacttgattttaaaataatgttgattTGGTTTTTCACTGTTCAGAATAGTTGTTAATCAAGCAGtgtgttcatgtatttattCGTATAATGTCTCTGTAATGTTTGTGTTGCACTTGTCttttaattattcacatttttcaatTTGCAGAAGGCAATTCACTTTGGGGgtgaaaaatgtgttaaatgtgcaGTCAAAGCTGAAGATGTACTGATtacttgtaaataaaaatggtttttaaagTCCGTAACTGATTTCAGACCTGCCAATATGGAAGGCCATCCCtgacataattattaataaacgcacaaagaaatgtaataaagaaaagcataaataaatatacaaataaaagttaaaaaaacaaaatacataatattatttcCTTATGTATTTTGCCccccacattttttttatttctacatttccacttttatttattttcacatctgtgtatatgtttatgtatttctacatgtatttatttaaatgttaatgaggaATAGCGATCGAGGGATAAACTTTAAGGTAACAGCGACACCTAGTGGTGCCCGAAGCAGTCACAGGATAGACCCTAACATGGACTATTGCGAGAAGTTTCATGCttttatgaaacacaaatatcaaatatcaccTCAAATTTTGCACATATCACCTCGACTATACAAAGAAATCTGTGAAATGCTTACAgatcattaaatgtttatttaactgAAATAGAAACACTGAATTAGTGTACCCTTTAGAGCGGTTGATCTAATTATTTTAGGAGTTTACCTCGTACATGCACTTCTACAAATACACGTTagatttaaacacacattttgtcCTTAAGCTCTAGAGCAGACTCTGAACATTCAATCCAGAATGATATTTACTTCCTATCATTCATGGATTTATTATTCATGTCATTCTCGGTAATTTACCAGTAATACTGTTGGGTGCTGGATGTAGATAATTGCCGCTTGTgcctttattaaatatgacttcTTTGTCCGGTTGTAATATTTCCTATTGTGAGTAAAAGTAAACAGCTTTGTTCTGTACCGTGCACTTGGACTTAGacaactattaataaacactgACCGTATACCATAACAGGCATAATAGTGGATAATTCTGCcagtaaacaaaatattaaagttcTTTTGAAGACTGCACAGTCCTAGTCTGACCGAGATCTAGTGTGCAACAGGAAAAGCTCTTTCTGTTCATTCAATATTAAACCAGAACGTGATGTGGCTTTTACTTCGCCGGTTATTTTTAGTCTCTCAGTTATCAGGCAATAGTTAAatcaaatgcaatttataaaactgtgttattttttataaagaatgtTAATGAATCACAGTTATGAAAAACATGTAAGACTGAAGCCAGACAAGCATTGGAGACAAGCATCTGCCGCTTCACACACGTAACACGGATAGCACATACATGCATAGCCTACAAACATACACCTTGGAGCAATCTTATCGCTttaatgagaataaaataaaagccagTCATTTAATCAGTTGGTACTGACGTTAACATCAATCACAAAATGAACCCAGAAACGGTCAATAGCAAACAAACCATAAAACCAGAAAGAGAAATCAGTGTTCTTCTTTCATTTCACAATACTTATTATAATAAACCAATCACACCAGAGAAGCATTAACTAATTTAACATGAACATTAACTACTAcgtgtgctgtgtgttttcaggatAAAACATCTGTGACTTGACAAAGACAACGACAAAGTCAAGCCGCAGTTCATCTGTATGATGTGATGGATGACGGCTGAGAAACGGCGTTAGA

Function

symbol description
pcdh8 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and retina. Orthologous to human PCDH8 (protocadherin 8).

NR:

description
PREDICTED: protocadherin-8

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241916.1 True 7012 mRNA 0.43 3 14490784 14498314

Neighbor

gene id symbol gene type direction distance location
tmem131l LOC107695518,LOC107745862,LOC107757619,LOC107700308 coding upstream 31766 14425254 ~ 14459018 (+)
mnd1 mnd1,LOC107700309 coding upstream 66639 14413027 ~ 14424145 (+)
LOC122350619 dctpp1,LOC107695562 coding upstream 647393 13842778 ~ 13843391 (+)
fhip1aa fam160a1,fam160a1a,LOC107745858,LOC107695572,LOC107700307,LOC107757618,LOC107598295 coding upstream 663402 13809693 ~ 13827382 (+)
rps3a rps3a,LOC107695588 coding upstream 704171 13783815 ~ 13786613 (+)
plrg1 plrg1,LOC107757621,LOC107695461,LOC107700313 coding downstream 85336 14583650 ~ 14588764 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding downstream 107138 14605452 ~ 14607397 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding downstream 136906 14635220 ~ 14643239 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding downstream 145699 14644013 ~ 14659537 (+)
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding downstream 163344 14661658 ~ 14663101 (+)
G3282 NA non-coding upstream 8978 14481430 ~ 14481806 (+)
G3262 NA non-coding upstream 84781 14402406 ~ 14406003 (+)
G3245 fbxw7,LOC107757568,LOC107745860 non-coding upstream 216999 14268912 ~ 14273785 (+)
G3165 gatb,LOC107695556 non-coding upstream 608389 13828059 ~ 13882395 (+)
LOC122345860 sh3d19,LOC107745872,LOC107695906,LOC107598296,LOC107700261 non-coding upstream 697944 13787434 ~ 13792840 (+)
G3322 arfip1,LOC107695488,LOC107745866,LOC107700312 non-coding downstream 28303 14526617 ~ 14528471 (+)
G3324 NA non-coding downstream 32702 14531016 ~ 14532206 (+)
G3326 fgg,LOC107745866,LOC107695488,LOC107714655,LOC107695473,LOC107700315,LOC107757622,LOC107572199 non-coding downstream 34701 14533015 ~ 14596547 (+)
G3361 NA non-coding downstream 116619 14614933 ~ 14615917 (+)
LOC122353352 NA non-coding downstream 122345 14620659 ~ 14624093 (+)
LOC122345399 NA other upstream 9438 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 372351 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 904803 13516208 ~ 13585981 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 1285068 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 1766326 12659262 ~ 12724458 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 103998 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 111930 14610244 ~ 14612677 (+)
G3380 LOC107572695,LOC107695836 other downstream 225231 14723545 ~ 14791788 (+)
hemgn hemgn,trmo other downstream 532630 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 680289 15178603 ~ 15317624 (+)

Expression


Co-expression Network