LOC122347221 (LOC107751081,LOC107698893,LOC107555241)


Basic Information

Item Value
gene id LOC122347221
gene name LOC107751081,LOC107698893,LOC107555241
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1574618 ~ 1583412 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242418.1
CGCGCTGACGCAATTCCGCTACGCGCGAAATTTTGAGCGCTCCACACAAAACAAGAGACGGTTCCCGCCTCGCGGCGCAATAACGTTCAGGATGGCGGATCTGGGCTGCTACTCTCCCAGCTTTAAGAAGCCCTCCGATGTTCTGCGGATGAGACGGAAGCGCGTGCGGAGCGAAGGCCCGGAGCGGGGGCCGGTGGAGGGGGTCCGTCCGTTCTCTCCGGGGCCGCGGCTGAACGCACCGGGACGGACGGGCGGCGGCGGCGGGAAGCGAAGGAATCCGTTCGCCAACATCGAGAACACGTACAACAGTCCCAAGAAGAGAGCTTTATTCTCAAACAGCGACGGACACGACAGCGCGCCGGACGCTAGAAAGACGCTTCTGGACGGAAAACCCCGGGAAGAACGGGACGACGCTGCAACGTCACTGAGAGAGGAACTGTTCAACACTGAGAGACAACAACACCTCGAGAGAACGACGCCCGACTCTGTTTCTGAAGACGTGGGTCTGTTCGAGGAGGACCTGTTCGAGTCGGAGAGATCCGCTCCGGTTCTGAAGAGTCCAGAAGCGCAGCGTGACGCCGCTCCAGCTGAGGTGTGTCTGGAGTTCCCGGCCGACTGGTCTCTGAAAACCCGTCTGTTGTTCACGTCTCCTCGGTCGTTCTCGTGGGCCGAGCATCCGAAGGCTCAGGAGGAGGCGCAGGGCTTGAGCTCTCACTGCAGGGCCCAGTTCTCCAGCTTACCTCCTCACATACAGgagccGCGGGGCTGTGCCGAGCTCCGCTGTGGCTTTCATCAGTGTCTTCAGTACTGGCAGCATCCCTCGCTGCCCTGGCTCCCGCTCTTCCCTCGCATCGGCGCCGAGCGCAGGTTCTCCGGGAAGTGCATGCCGTGGTCGCAGGACCCAGCTCTGCAGCAGAGTCTGATGAGCGACTGGTCTGTGAGCCTGACGTCTCTCTACGGTCTCCTGAAGGCTCGTCTCTGCCCGTATTTCTATCTGTGCTCGTATCAGTTCACGGTGCTGTTCAGAGCGGCCGGTCTGAGCGGAGCTAAGGGCCTCAGCGCGCTGCTGTCCCCCTCCACCAGGGGCCTGCGGGAGGCCATGAAGGCCGAGGggATAGagttctctctccctctgctggaggagaggaggaagagcagGGAGAGCGGTCGGGCCGAAGACGAGGAGTCGCTCAGCGGCGCTGGGTTAAGTGAAAacgaggaggaggatgaagatgaggatgatgacGATGACGGTGGATTTTCCTGGCTGAAGGAGATGGGCGTCCAAGACAAGATCAAGAAACCAGATGCCATTTCTATAAAACTTCGTAAGGAGCACCGAGAGGTTCGTCTGGATCACCGGCCGGAGTCCGTGGTGTTGGTGGAAGGCTCCGACACCTTCACGCTGATCAACTTCCTCATCAACTGTAAGAGTTTGGTGGCTGGAGCCGGTTCTCAGGCGGGCCTTCCTCCGACTCTACTGGCCCCGACGGCCTTCAGAGGGGCCACACTGCACACGCTCAAGGCGCGGACGGTGAACGTGAAGACTCAGGTGAGAAGCGGCTATCAGGACGTGTGCAGTCTGGAGGTGACGGGACCCATCATGCCCCACACGCTCCACGCTCTGACCCAGCTCCTCAGACCCGCTCAGAAAGGAGAGTTTTCTGTGGCTCTGTACACCCACGAGCCCACAGCGGTCCTGAACGTGCCCCTGagcctgacctctgaccccgagCAGCCGGACCTGGGCAGATGTGGCCTCCAGCAGAGCTCCGTTCAGCAGCTGGCCGCGCCGAGCATGCTGGGAAAGAGCGCTCTCAGACAGCTGCACATGAAAGACTACTCGTACAGCTGGAAGTCCTGAGAAAACATTAATAGAGAGCTGACGGGCCCTGCCTATTAATATCTGTGGCGTATCAGGCTTCCTgtgacgctcacacacactcatctttATAGACGCTGGGCGTGAATAGTTTTTAGCGAGTAGTTTTTAGCGTTGTCTGAACGCATTAGGAGTTAACACGGTCTAGTTTGTcgtttttaaatctgttttatgtTCACGGGctgtaataatgttttagaCTGTGATGAGAACAAATAATGACTTCCCTGGGAAGAAACTCTTTCGTGATTATATTACAGTTGCCAGTGTATTTATCACTCttgtatgattttattaaatgaacgagtttaaatattt

Function

NR:

description
PREDICTED: protein downstream neighbor of son homolog isoform X2

GO: NA

KEGG:

id description
K22422 DONSON; protein downstream neighbor of Son

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242418.1 True 2200 mRNA 0.57 10 1574618 1583412

Neighbor

gene id symbol gene type direction distance location
runx1 runx1,LOC107555250,LOC107698911,LOC108429862,LOC107653683,LOC107571884 coding upstream 3730 1525107 ~ 1570888 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding upstream 109333 1456086 ~ 1465285 (+)
LOC122350806 NA coding upstream 227825 1334924 ~ 1346793 (+)
LOC122351641 NA coding upstream 243069 1328385 ~ 1331549 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding upstream 312650 1246693 ~ 1261968 (+)
LOC122343461 NA coding downstream 1200 1584612 ~ 1591930 (+)
zgc:152904 zgc:152904,ncam2,LOC107698913,LOC107751079,LOC107721821 coding downstream 128630 1712042 ~ 1893196 (+)
LOC122345473 LOC107751076,LOC107593744,LOC107698914,LOC100332351 coding downstream 354038 1937450 ~ 1941621 (+)
gart gart coding downstream 358649 1942061 ~ 1961643 (+)
LOC122350785 adamts5,LOC107751075,LOC107593743 coding downstream 569824 2153236 ~ 2171533 (+)
G270 NA non-coding upstream 88975 1485146 ~ 1485643 (+)
G227 NA non-coding upstream 106487 1467485 ~ 1468131 (+)
LOC122350990 NA non-coding upstream 172003 1357834 ~ 1402615 (+)
G312 NA non-coding downstream 322240 1905652 ~ 1905963 (+)
G318 NA non-coding downstream 347245 1930657 ~ 1991767 (+)
G319 NA non-coding downstream 348404 1931816 ~ 1933144 (+)
G320 NA non-coding downstream 352761 1936173 ~ 1951320 (+)
G404 NA non-coding downstream 498060 2081472 ~ 2081820 (+)
LOC122327253 NA other upstream 132952 1439040 ~ 1441666 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 453897 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 1124978 445940 ~ 449640 (+)
G10 NA other upstream 1396418 177716 ~ 178200 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 602409 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 900228 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 910160 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 928160 2511572 ~ 2518385 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other downstream 941113 2524525 ~ 2527244 (+)

Expression


Co-expression Network