cisd2 (cisd2,LOC107552739,LOC107746991,LOC107556804)


Basic Information

Item Value
gene id cisd2
gene name cisd2,LOC107552739,LOC107746991,LOC107556804
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20693265 ~ 20695767 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242532.1
CACTACGCAATGACGTACAATGCCCAGGAAATATCCTGCTGTCTCCCAATTAGAAGCGCACAAAGTCATTCAAGATGGTGTTAGAAAGTATCTCCAGGATTATCAAAATACAACTTCCAGCCTACCTCAAGAAACTGCCCCTTCCAGAAACAATCGGCGGATTTGCGAGACTCACAGTTTCAGAGTGGCTCCGGCTCCTACCGTTATTGGGCATTTTGGCTCTGTTGGGTTATCTGACAATCCGGCCCTTCCTGCCCAAGAAGAAAAAGCAAAGAGACAGTCTAATAAATCTAAagattcaaaaagaaaaccctAGAGTGGTGAATGAGATCGACATAGAGGACCTGAGGACTCCAAATGTTTGCTACTGCCGCTGCTGGCGATCTAAAACGTTTCCTGTTTGCGATAAATCGCACATAAAACATAACGAGCTGACAGGAGACAACGTCGGTCCACTTATTCTTAAGAAGAAGACGCTGTAGCCCTTCTGCTTTGGCCCATATTCAATACAGTTTTCTCCACTGAAAAACTACTGTAATTTAGTTTGTAGTACTCACCCAAAACCATTTCCAACTTCTTGTTGTGGCATAGAGCTGTAAATTCTGACTTTAATGCTCAAGATATTGTGGTTAATCTAAGAGATTAAGTatgcatctttttttgttacattgctcttgtgtgtttactttttatacttGGCAAATGTAGTAgatttttgtgtgcaatataACTTGGCCTTGGAAAAATGGCATGTACCATCACCAATCAGTCTTCTCGGCCACGAAATTGTCCTTTCTGTTCTTAATCTGTATCTAGCTTTAGTTTTAACGTTAAGTTGCCTTTTACTGTTACCGTTGTGTTGTCAATGTGACAAAATTGTGTTCGACGTTTTCTGAgacgatataaaaaaaaaatcaaatactttTAGCTTCTCGATGTGAAGTACGggatttgtttttgtagtttttttttatttgtaatttgctGCAGAATTATTCCTTAAAACGGCAAGAGTTCTACGATGTTTGCTAAATTATTTGAACGTTTTCAAGCGCGGGATGCTGAAGCTGACTTGTGTTTGCGTGGAAAGACGTTTCACATTGCATTAGATCGTAACAAACGCTTACTGTTatgcattattcaaatattaccATGTTTATCATAAGAAATGGCCCCTTTAAACACGCACCTGAACAAAGATGCTGCAACAAATACAATTCGTAATACGTATGCGTTCGTtcctattcaaaagtttgacaATCCCTCGGTTCTCTTTGTGCCATGTTTCATTTCAGATGAAAGTCTCCtgttcataaaaaatacatttgtgtgttaACTGGAATGTGCCTACTGACTTTTGCGAAATAAAAGACAACCAAACTTCTTTTACATCACTCTA

Function

symbol description
cisd2 Predicted to enable 2 iron, 2 sulfur cluster binding activity and protein homodimerization activity. Predicted to be involved in autophagy of mitochondrion; multicellular organism aging; and regulation of autophagy. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in Wolfram syndrome 2. Orthologous to human CISD2 (CDGSH iron sulfur domain 2).

NR:

description
CDGSH iron-sulfur domain-containing protein 2A

GO:

id name namespace
GO:0000422 autophagy of mitochondrion biological_process
GO:0010506 regulation of autophagy biological_process
GO:0010259 multicellular organism aging biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K23882 CISD2; CDGSH iron-sulfur domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242532.1 True 1399 mRNA 0.39 3 20693265 20695767

Neighbor

gene id symbol gene type direction distance location
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 243146 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 258894 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 265454 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 291549 20377317 ~ 20401716 (-)
LOC122344866 NA coding downstream 316681 20369531 ~ 20376584 (-)
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding upstream 685934 21381701 ~ 21384924 (-)
LOC122348874 LOC107552383 coding upstream 716096 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 843999 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 872335 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 926598 21622365 ~ 21663567 (-)
G4934 NA non-coding downstream 224250 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 233081 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 248471 20442952 ~ 20444794 (-)
LOC122345304 NA non-coding downstream 427082 20265285 ~ 20266183 (-)
G4870 NA non-coding downstream 428196 20199995 ~ 20265069 (-)
LOC122349798 NA non-coding upstream 7709 20703476 ~ 20718890 (-)
G5047 NA non-coding upstream 917151 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 1348135 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 1652747 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 1716695 22412462 ~ 22414007 (-)
G4958 NA other downstream 6525 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 324154 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 380317 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 552686 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 1154119 19535964 ~ 19539146 (-)
ctnna2 ctnna2,LOC107689479 other upstream 210403 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 853850 21549617 ~ 21564077 (-)
G5104 NA other upstream 1022372 21718139 ~ 21766284 (-)
G5108 NA other upstream 1028620 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 1066114 21761881 ~ 21799744 (-)

Expression


Co-expression Network