rfc1 (rfc1,LOC107709439,LOC107700290,LOC107757601)


Basic Information

Item Value
gene id rfc1
gene name rfc1,LOC107709439,LOC107700290,LOC107757601
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13123871 ~ 13136414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243607.1
tctctctctctctgcctccatCTGCGCGTCATCACGCTGCGCCTGAGTTGAGTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACTGTCTCGCaaattgtcaaaaaataaagaaacgcTTTTGACACATGCTTGCAAATGGATATCCGGAGGTTTTTTGCATCCACCAAACCTGCGGCCCCCAAACCTTCTAATGGAAGTACCAGCACCGACGAAGAGccgaagaagaagaaacaaaaatcaaaaactaaggTCACAAGTCCCACGTCTGATGAGAAACCATCTGGAAAACGAAAAAAAAGAGTCATAATTGATTCAGACTCtgaggaagagaaaaagaaggagaagaagaccAAGAAGGGCACTAAAGACACCGATGCTGCCACCGTGAAGAAACACCCCGTAACTTACGTGTCTGATTCTGATTCAGATGATACGTTTATGACTCTGAAAAAGGCGAAACCCAAAGAAAATGGAACAGCTAAAGGCAAGAAAGAATCAGATTCAGGAAAAGCAAAACAAGCGAAAGTCTCATCCGGTAAATCCCCAACCAAGTCCCCAAACGCAGTCTCGAAGGGAGGGGTAAAGAGCTCTCAGCCTGCCGTCTCCCCAAAGATCGGACCGACGCCGCCAAAACAAACGCCCACTTCAGTAATGGCCTTCTTTGGCAGCTCAAGTGTTCAGAGGTCAGACAAGAAAATGGTGGCCAGTACCAGCGCTAAAAGGAAGGCACCCACACAGGAAACTGAGGAGTCGCTCAGTGATGAAGCCATTGCAAAAGAGCTGCAGATGGATGAAGACATGGAGtTGGAAAAGCAGATCCATGATGATGAGGAATTTGCAAGAACGTTAGCcaagctggatgaagcgcccttACCGAAAAAGGCTCGGGTGGAATCTGTCTCCCCCTCCAAGAGCAGCTCTCAGACAAGTTCCTCAAACACCAAACCCAAACAGGACCCGTCCCCTAAAAAGAGTCCGGTGAAGACCAGCTCCAAACTGGCTCAGATGAAAAGACGACAGGAAGAAGTGGAAGAGCAAAGGAAAAAAGACAGGGGTGAAAAGCAGATTAAAATTTCTCCTAAGAAAGAGCCAATCTCACCAAATAGCTCGGAGCGGGCAGCTACGCCCAAAACAGGAAGTGTTTCCACCGGATTGACAAAATCAACACCTAAAAGTGACAGTGCACCCAATAAAACCTCGCCAACAAAACCGGAGAATACAAGCCCTGAGGATCTAGAGAAAAAACGGGCAAATTCATCAGCCTACCGTAACTATTTGAACCGAGAAGGACCACGAGCACTGGGGTCTAAAGAGATACCGCAGggagCAGAGAACTGCCTGGAgggttgtgtgtttgtgttgaccGGTGTGTTAGAATCTATGGAGAGGGATGATGCTAAGTCACTAATAGAGCGATATGGCGGGAAAGTCACAGGAAACGTCAGCCGTAAAACTACTTACCTTGTTCTGGGACGAGACAGTGGAGTCTCAAAGACCGAAAAGGCGGAGAGTTTTGGCACTAAGATCATAAATGAAGATGAGTTGTTGAACCTCATAAGAAGCAAACCAGGCAAGAAGTCTAAATACGAGATTGCGGCAGAAGCAGAGAATAAATCCTCTAAAACAAGGACTCCAGACTCTAGAGGCAAACCAACTCCTCCATCCAAGAAGGCCACACCACAAGGGCCCAGCCCCAACAAGAGAAACCCTTCAGAGGGAAAGTCTAAGCCTGGCTCTGCTTCTAAATCTGGAACACTTGGGACTTCTCGTTCAGAGGTCAAAAAGAGTTTGAGCTTTGATCAATCCAAGCGAGCATCCCCTGTATCCCACTCTACCCCCGAGAGTGAGGGTAGCAGCCTGTTGTGGGTGGATAAGTACCGCCCCCGTAGTCTGAAGAACCTGATTGGGCAGCAGGGGGATCAGAGTTGTGCTAACAAGCTTCTGCGTTGGTTACAGAACTGGCATAAACATCATAGCGGCAATACAAAAGCACCACCAGCCAAATTTGGAAAGTTTGGGAGTAAAGACGACGGTTCTGGGTTTAAGGCTGCGCTGTTATCTGGGCCTCCTGGCGTGGGGAAGACGACTACGGCCGCTCTTGTCTGTGAGGAGTTGGGTTACAGCTACGTGGAGATGAATGCGAGCTGCACCCGGAGTAAGAACAGCTTAAAGGAAGTGATCGCAGAATCACTCAACAACACCAGCATTAAGAACTTCTATTCCGGTGCATCTCAGACAGTGAGCAGTAAACATGCCCTCATAATGGACGAGGTGGACGGGATGGCAGGAAATGAAGACAGAGGAGGAATACAGGAGATGATTGGTCTGATAAAACAGTCAAAGATTCCCATCATCTGCATGTGCAATGACCGCAATCATCAGAAGATCCGCTCGCTGGCGAACTACTGCTACGATCTGCGCTTTCAGAGACCCCGCGTTGAGCAGATCAAGggGGCTATGATGTCTATAGCTTTTAAAGAGGGTCTGAAGATCCCACCCCCAGCTCTGAATGAAGTCATTCTGGCGTCCAATCAGGATATTCGGCAgGTACTGCATAATCTGAGCATGTGGTCTGCTAAAGACAAAGTCATGACCTATGACCAGGCCAAAGCTGATGCTAACAATGCTAAGAAGGACATGAAACTGGGTCCGTTTGATGTGTGTCGTAAGGTGTTTTCTTCAGGAGAGGAAACTGCCCACATGTCTCTGATTGACAAATCAGACCTTTTCTTCCATGATTACTCTTTAGCACCACTATTTGTTCAAGAAAACTACCTGCATGTCCGACCAGCTGCTGCAGGGGGAAATCTGAAGAATCATTTGGTGTTGTTGAGTAAAACAGCAGACAGCATTTGCGATGGAGATTTAGTGGACAAACAGATCCGCTCCAGACAGACATGGTCTCTGCTTCCCACACAGgcGATTTATGCGAGCGTGTTGCCGGGGGAGTTGATGCGAGGTTATATGAGTCAGTTTCCGACCTTTCCCAGCTGGTTGGGCAAGTTCTCATCGGCTGGCAAACACAGCCGCATCATACAGGAGCTTGCTTCACACATGAGCCTAAAAACATTAAGTAGTAAGCAAGCCTTAAATCTGGATTACCTGCCGTATTTGCGCGCAGCAATATTAGAGCCTCTTCAGTCGCAAGGTTCGGagggagccaatcagagcgtaAAGCTCATGGATGATTATGACATCATCAAAGAGGATGTTGATAACATGATGGAGATCAGCATGTGGGGCGGACAGCCGGATCCCTACTCTAAACTAGACtctaagGTGAAAGCTGCGTTTACAAGAGCCTACAATAAGGAATCCCATCTTACGCCTTATTCCTTACAAGTGGTGAAGAAAAGCCGTAAAGGTGCTGTTGACCCTGAGCTTATAGGAGAGCTTGAGACTGAATCTCAGTTCCAGGAAGAGGAAGACGATGATGGGCTTACAGCAGATGCAATGATAAAGCAGAAAAAAGCCAAACCAGCAAAGGACATCAAGCAAGAGAAACCAGGGGCTTCTGGGAAGGGGAAAGGCAGGGGTAAAGGAAAGGCCAAGAAGTGAGAGAAACATAGGAGAGAACGAGACGGAAAGCcctcctctctttctgttttcacaAAGAGTGGCTGAATGACATTAGCTCtataaacagaatttttttgtctgtgagTCATACTCGTGCACTTCCTGAAAGCCATCACTCAGCGTAAGCTGCTTTCAGCAGAGCGGACACTGCAGGGACCGGGGGGCTGGGGGTGGACCACACATTTTCACAGAAGTTATTATATGGTTCACAATTCATCAAGCATGTACATATGCATCATACTGTTAACACGCGGCTCTGAAGCTATATTCATCTCAAAGGTAAACAGAGTTAAGGGCACTTAATGTCACTGTACTGGCGTAACCCTCATGACAAagtacacaaacatttaaacatattagcttcagcttttcacatttaaacacGCTCCCTCTTCCACACAGATACCATCTATACTCGCTGCATGTCAAGTACACATCGTGTAAATACCTGTCTGCCACGTTAGCATTTTTCGGGAATACTTGcagatgaatatatataaacaatccTTTTCTTAGTTTTCTATGGCAGTACTTTTGGATTGATAGTGTGTGATATTAACCTGAAGATTATTCTGTAAATGACTGAACGTGTacaatttgaataattaaaacaagaaTTATGTTGTA
>XM_043243613.1
tctctctctctctgcctccatCTGCGCGTCATCACGCTGCGCCTGAGTTGAGTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACTGTCTCGCaaattgtcaaaaaataaagaaacgcTTTTGACACATGCTTGCAAATGGATATCCGGAGGTTTTTTGCATCCACCAAACCTGCGGCCCCCAAACCTTCTAATGGAAGTACCAGCACCGACGAAGAGccgaagaagaagaaacaaaaatcaaaaactaaggTCACAAGTCCCACGTCTGATGAGAAACCATCTGGAAAACGAAAAAAAAGAGTCATAATTGATTCAGACTCtgaggaagagaaaaagaaggagaagaagaccAAGAAGGGCACTAAAGACACCGATGCTGCCACCGTGAAGAAACACCCCGTAACTTACGTGTCTGATTCTGATTCAGATGATACGTTTATGACTCTGAAAAAGGCGAAACCCAAAGAAAATGGAACAGCTAAAGGCAAGAAAGAATCAGATTCAGGAAAAGCAAAACAAGCGAAAGTCTCATCCGGTAAATCCCCAACCAAGTCCCCAAACGCAGTCTCGAAGGGAGGGGTAAAGAGCTCTCAGCCTGCCGTCTCCCCAAAGATCGGACCGACGCCGCCAAAACAAACGCCCACTTCAGTAATGGCCTTCTTTGGCAGCTCAAGTGTTCAGAGGTCAGACAAGAAAATGGTGGCCAGTACCAGCGCTAAAAGGAAGGCACCCACACAGGAAACTGAGGAGTCGCTCAGTGATGAAGCCATTGCAAAAGAGCTGCAGATGGATGAAGACATGGAGtTGGAAAAGCAGATCCATGATGATGAGGAATTTGCAAGAACGTTAGCcaagctggatgaagcgcccttACCGAAAAAGGCTCGGGTGGAATCTGTCTCCCCCTCCAAGAGCAGCTCTCAGACAAGTTCCTCAAACACCAAACCCAAACAGGACCCGTCCCCTAAAAAGAGTCCGGTGAAGACCAGCTCCAAACTGGCTCAGATGAAAAGACGACAGGAAGAAGTGGAAGAGCAAAGGAAAAAAGACAGGGGTGAAAAGCAGATTAAAATTTCTCCTAAGAAAGAGCCAATCTCACCAAATAGCTCGGAGCGGGCAGCTACGCCCAAAACAGGAAGTGTTTCCACCGGATTGACAAAATCAACACCTAAAAGTGACAGTGCACCCAATAAAACCTCGCCAACAAAACCGGAGAATACAAGCCCTGAGGATCTAGAGAAAAAACGGGCAAATTCATCAGCCTACCGTAACTATTTGAACCGAGAAGGACCACGAGCACTGGGGTCTAAAGAGATACCGCAGggagCAGAGAACTGCCTGGAgggttgtgtgtttgtgttgaccGGTGTGTTAGAATCTATGGAGAGGGATGATGCTAAGTCACTAATAGAGCGATATGGCGGGAAAGTCACAGGAAACGTCAGCCGTAAAACTACTTACCTTGTTCTGGGACGAGACAGTGGAGTCTCAAAGACCGAAAAGGCGGAGAGTTTTGGCACTAAGATCATAAATGAAGATGAGTTGTTGAACCTCATAAGAAGCAAACCAGGCAAGAAGTCTAAATACGAGATTGCGGCAGAAGCAGAGAATAAATCCTCTAAAACAAGGACTCCAGACTCTAGAGGCAAACCAACTCCTCCATCCAAGAAGGCCACACCACAAGGGCCCAGCCCCAACAAGAGAAACCCTTCAGAGGGAAAGTCTAAGCCTGGCTCTGCTTCTAAATCTGGAACACTTGGGACTTCTCGTTCAGAGGTCAAAAAGAGTTTGAGCTTTGATCAATCCAAGCGAGCATCCCCTGTATCCCACTCTACCCCCGAGAGTGAGGGTAGCAGCCTGTTGTGGGTGGATAAGTACCGCCCCCGTAGTCTGAAGAACCTGATTGGGCAGCAGGGGGATCAGAGTTGTGCTAACAAGCTTCTGCGTTGGTTACAGAACTGGCATAAACATCATAGCGGCAATACAAAAGCACCACCCAAATTTGGAAAGTTTGGGAGTAAAGACGACGGTTCTGGGTTTAAGGCTGCGCTGTTATCTGGGCCTCCTGGCGTGGGGAAGACGACTACGGCCGCTCTTGTCTGTGAGGAGTTGGGTTACAGCTACGTGGAGATGAATGCGAGCTGCACCCGGAGTAAGAACAGCTTAAAGGAAGTGATCGCAGAATCACTCAACAACACCAGCATTAAGAACTTCTATTCCGGTGCATCTCAGACAGTGAGCAGTAAACATGCCCTCATAATGGACGAGGTGGACGGGATGGCAGGAAATGAAGACAGAGGAGGAATACAGGAGATGATTGGTCTGATAAAACAGTCAAAGATTCCCATCATCTGCATGTGCAATGACCGCAATCATCAGAAGATCCGCTCGCTGGCGAACTACTGCTACGATCTGCGCTTTCAGAGACCCCGCGTTGAGCAGATCAAGggGGCTATGATGTCTATAGCTTTTAAAGAGGGTCTGAAGATCCCACCCCCAGCTCTGAATGAAGTCATTCTGGCGTCCAATCAGGATATTCGGCAgGTACTGCATAATCTGAGCATGTGGTCTGCTAAAGACAAAGTCATGACCTATGACCAGGCCAAAGCTGATGCTAACAATGCTAAGAAGGACATGAAACTGGGTCCGTTTGATGTGTGTCGTAAGGTGTTTTCTTCAGGAGAGGAAACTGCCCACATGTCTCTGATTGACAAATCAGACCTTTTCTTCCATGATTACTCTTTAGCACCACTATTTGTTCAAGAAAACTACCTGCATGTCCGACCAGCTGCTGCAGGGGGAAATCTGAAGAATCATTTGGTGTTGTTGAGTAAAACAGCAGACAGCATTTGCGATGGAGATTTAGTGGACAAACAGATCCGCTCCAGACAGACATGGTCTCTGCTTCCCACACAGgcGATTTATGCGAGCGTGTTGCCGGGGGAGTTGATGCGAGGTTATATGAGTCAGTTTCCGACCTTTCCCAGCTGGTTGGGCAAGTTCTCATCGGCTGGCAAACACAGCCGCATCATACAGGAGCTTGCTTCACACATGAGCCTAAAAACATTAAGTAGTAAGCAAGCCTTAAATCTGGATTACCTGCCGTATTTGCGCGCAGCAATATTAGAGCCTCTTCAGTCGCAAGGTTCGGagggagccaatcagagcgtaAAGCTCATGGATGATTATGACATCATCAAAGAGGATGTTGATAACATGATGGAGATCAGCATGTGGGGCGGACAGCCGGATCCCTACTCTAAACTAGACtctaagGTGAAAGCTGCGTTTACAAGAGCCTACAATAAGGAATCCCATCTTACGCCTTATTCCTTACAAGTGGTGAAGAAAAGCCGTAAAGGTGCTGTTGACCCTGAGCTTATAGGAGAGCTTGAGACTGAATCTCAGTTCCAGGAAGAGGAAGACGATGATGGGCTTACAGCAGATGCAATGATAAAGCAGAAAAAAGCCAAACCAGCAAAGGACATCAAGCAAGAGAAACCAGGGGCTTCTGGGAAGGGGAAAGGCAGGGGTAAAGGAAAGGCCAAGAAGTGAGAGAAACATAGGAGAGAACGAGACGGAAAGCcctcctctctttctgttttcacaAAGAGTGGCTGAATGACATTAGCTCtataaacagaatttttttgtctgtgagTCATACTCGTGCACTTCCTGAAAGCCATCACTCAGCGTAAGCTGCTTTCAGCAGAGCGGACACTGCAGGGACCGGGGGGCTGGGGGTGGACCACACATTTTCACAGAAGTTATTATATGGTTCACAATTCATCAAGCATGTACATATGCATCATACTGTTAACACGCGGCTCTGAAGCTATATTCATCTCAAAGGTAAACAGAGTTAAGGGCACTTAATGTCACTGTACTGGCGTAACCCTCATGACAAagtacacaaacatttaaacatattagcttcagcttttcacatttaaacacGCTCCCTCTTCCACACAGATACCATCTATACTCGCTGCATGTCAAGTACACATCGTGTAAATACCTGTCTGCCACGTTAGCATTTTTCGGGAATACTTGcagatgaatatatataaacaatccTTTTCTTAGTTTTCTATGGCAGTACTTTTGGATTGATAGTGTGTGATATTAACCTGAAGATTATTCTGTAAATGACTGAACGTGTacaatttgaataattaaaacaagaaTTATGTTGTA

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

NR:

description
PREDICTED: replication factor C subunit 1

GO: NA

KEGG:

id description
K10754 RFC1; replication factor C subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243607.1 True 4211 mRNA 0.47 24 13123871 13136414
XM_043243613.1 False 4208 mRNA 0.47 24 13123871 13136414

Neighbor

gene id symbol gene type direction distance location
adgrl3.1 adgrl3.1,LOC107709467,LOC107671918,LOC107702411 coding downstream 39368 12993244 ~ 13084503 (-)
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding downstream 157364 12963598 ~ 12966507 (-)
ldb2b ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309 coding downstream 167609 12944109 ~ 12956262 (-)
tapt1b tapt1,LOC107750443,LOC107702406,LOC107671913,LOC108434341,LOC105908524 coding downstream 180454 12929116 ~ 12943417 (-)
fgfbp2b LOC107750470,LOC107702288 coding downstream 224208 12897567 ~ 12899663 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 1013 13137427 ~ 13141344 (-)
ugdh ugdh,LOC107757604,LOC107700292 coding upstream 11030 13147444 ~ 13154024 (-)
pds5a pds5a,LOC107757607,LOC107700294 coding upstream 31745 13168159 ~ 13189762 (-)
trnar-ucg NA coding upstream 81980 13218394 ~ 13218468 (-)
trnar-ucg_1 NA coding upstream 82882 13219296 ~ 13219368 (-)
G3020 NA non-coding downstream 236218 12886776 ~ 12887653 (-)
G2891 NA non-coding downstream 505829 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 528577 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 573632 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 668299 12455354 ~ 12455572 (-)
G3070 NA non-coding upstream 69373 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 158283 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 166339 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 252020 13388434 ~ 13388506 (-)
trnar-ucg_69 NA non-coding upstream 252839 13389253 ~ 13389325 (-)
smim18 NA other downstream 150859 12969093 ~ 12973012 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 197389 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 757763 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 1006488 12097910 ~ 12117383 (-)
apela NA other downstream 1335205 11783629 ~ 11788666 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 18072 13154486 ~ 13159444 (-)
G3072 NA other upstream 154882 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 693049 13829463 ~ 13842664 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 745479 13881893 ~ 13895284 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 1525060 14661474 ~ 14687860 (-)

Expression


Co-expression Network