ugdh (ugdh,LOC107757604,LOC107700292)


Basic Information

Item Value
gene id ugdh
gene name ugdh,LOC107757604,LOC107700292
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13147444 ~ 13154024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243773.1
TGTTTACGTTGCTATCCCCTCCCGGTGGGGGGGTGTGTGTGTTCTGCCTGAGTTTATGTATCAAGcatataatagttttattcattcGTGAACAAGGCACCTCAGACGGAGGAACCTTACCTGCATACTGGCCTGAGTCACACAGAAGAGTGTTTAACTGAAGAACTTCACTGTGAGACAAGatGTTTCAGATTAAAAAGATCTGCTGTATAGGCGCTGGGTATGTTGGAGGTCCGACATGTAGTGTCATTGCAAGCATGTGTCCCGAGATCACAGTAACAGTAGTGGACGTTAATGAATCCCGGATCAAAGCCTGGAACTCTGACACCCTGCCTATATACGAGCCGGGTCTCAATGAAGTAGTGTTGTCTTGCCGTGGGAAGAACCTCTTTTTCTCCACCGATATCGACACTGCCATTAAAGAGGCGGATCTGGTCTTCATTTCTGTAAACACCCCAACAAAGACGTATGGTATGGGCAAAGGTCGTGCTGCTGACTTGAAGTTTATTGAGGCATGTGCACGGCGGATTGTGGAGATGTCGGATGGGTATAAAATCGTTACGGAGAAGAGCACGGTGCCGGTCCGTGCTGCTGAGAGCATCCGCAGGATATTTGATGCAAACACCAAACCCAGCCTCAATTtgcagGTTCTCTCTAACCCAGAATTCCTTGCGGAGGGGACGGCAGTGAAGGACCTGAAGGACCCGGATCGTGTCCTGATAGGTGGAGATGAGACTCCAGAGGGCCAAAGGGCCATCAGCGCTCTCAGTGCAGTTTACGAGCACTGGGTCCCCAAATCACGCATAATCACCACCAACACCTGGTCCTCAGAACTTTCCAAACTggctGCAAATGCATTCCTGGCTCAGCGCATCAGTAGTATAAACTCCATCTCTGCCTTGTGTGAATCCACTGGTGCTGATGTGGAGGAGGTGGCCAGAGCCATCGGCATGGATCAGCGCATTGGGAGCAAGTTCCTCAAAGCCAGCGTGGGTTTTGGAGGAAGTTGTTTTCAGAAGGATGTGCTGAATCTGGTATATCTATGTGAGGCACTGAATCTCCCAGAGGTTGCTTCATACTGGCAACAGGTGATCGACATGAACGAATACCAGAGAAAGAGATTTGCCTGTCGGATCATTGACTGCCTGTTTAACACCGTTACAGGGAAGAAGATCGCTTTGTTGGGTTTCTCCTTCAAGAAGGACACTGGAGACACCAGAGAGTCCTCCAGTATCTACATCTCTAAGTATCTGATGGACGAAGGAGCCAAGCTGCATATTTATGACCCTAAAGTGCTGAAGGAGCAGATAATCCAGGACCTGTCTCAACCCAGCATTTCCGGAGACAGCCCGGAGAGAGTGTCTGATCTTGTAacggtgacctctgacccctatGAGGCGTGTGAGAGTGCACATGCCCTGGTCATCTGCACGGAGTGGGACATGTTTAAGGATCTAGATTACGAGAAAATATACCTCAAGATGTTGAaaccagcatttatttttgatggtcGACGCGTCCTGGACCATCTGCACCCTCAGCTACAAAACTTTGGCTTTCAGATCGAGACCATTGGAAAGAAGGTGACGACCCGAATTCCCTTCACACCATCTGGAGGAGTTCCACGAATCAGTGAACCACCCAACAAGAAATCCAAAGCCTAGACActgattctcacacacacacacacacacacacacgctcgtgCACTTTACACTGATTAAAGTCTTTTCCTGAGAATACCAAAGTAATGTGTGACCGTTGCTGGAAaccattttgtaaaaatgcatttgctttgtgtgtgtctgtgtgtgtgtttatgtcttaGGAATGTTTTTTAACACTGAGTTTTATATTTCTTGGCCGTTCGCAAGAATGCATTGATTCAATGTCATTTGTGTCttagttttttaaatcattattcttGAAATTTTGTTCTCATGTCTGTGCCATTTCAGAAATCTTTGTaacagttaatgcattaacgtCCCAATACAGTTTAGCAGTATATTATTGATTACAGATATCAGTGTTATAGATTTTTTCATGACTCATGAATCATGAAGTGTTATAGACTTCATGAATCATCTACTGAGAGCGATGTCTGAAGGAGCAGCAACAGAAGGAATGGTAACTTTTAAATGCTACGACCAAGTGggacataaaaaaacactgtttgtgtttgtgttcagttaTTAATCCACATCAATCCTTGTGTGCTATTGAGTCTTATTGTAGCTTTTATAAAATCATCTCTTACTGTACAGATTTATAACCGTCACGTACAACGATTGAAAAagtatttcttaaataaatatggACCAATGAAATGAA

Function

symbol description
ugdh Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Acts upstream of or within atrioventricular valve formation; determination of left/right symmetry; and positive regulation of signal transduction. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including axis; head; heart tube; mesoderm; and vestibuloauditory system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).

NR:

description
PREDICTED: UDP-glucose 6-dehydrogenase

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243773.1 True 2334 mRNA 0.45 12 13147444 13154024

Neighbor

gene id symbol gene type direction distance location
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 6100 13137427 ~ 13141344 (-)
rfc1 rfc1,LOC107709439,LOC107700290,LOC107757601 coding downstream 11030 13123871 ~ 13136414 (-)
adgrl3.1 adgrl3.1,LOC107709467,LOC107671918,LOC107702411 coding downstream 62941 12993244 ~ 13084503 (-)
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding downstream 180937 12963598 ~ 12966507 (-)
ldb2b ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309 coding downstream 191182 12944109 ~ 12956262 (-)
pds5a pds5a,LOC107757607,LOC107700294 coding upstream 14135 13168159 ~ 13189762 (-)
trnar-ucg NA coding upstream 64370 13218394 ~ 13218468 (-)
trnar-ucg_1 NA coding upstream 65272 13219296 ~ 13219368 (-)
trnae-cuc NA coding upstream 66776 13220800 ~ 13220873 (-)
trnar-ucu NA coding upstream 67558 13221582 ~ 13221654 (-)
G3020 NA non-coding downstream 259791 12886776 ~ 12887653 (-)
G2891 NA non-coding downstream 529402 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 552150 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 597205 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 691872 12455354 ~ 12455572 (-)
G3070 NA non-coding upstream 51763 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 140673 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 148729 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 234410 13388434 ~ 13388506 (-)
trnar-ucg_69 NA non-coding upstream 235229 13389253 ~ 13389325 (-)
smim18 NA other downstream 174432 12969093 ~ 12973012 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 220962 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 781336 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 1030061 12097910 ~ 12117383 (-)
apela NA other downstream 1358778 11783629 ~ 11788666 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 462 13154486 ~ 13159444 (-)
G3072 NA other upstream 137272 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 675439 13829463 ~ 13842664 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 727869 13881893 ~ 13895284 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 1507450 14661474 ~ 14687860 (-)

Expression


Co-expression Network