chrnb3a (chrnb3a,LOC107562617,LOC107655822,LOC107548357,LOC107709455,LOC107702298,LOC107750476)


Basic Information

Item Value
gene id chrnb3a
gene name chrnb3a,LOC107562617,LOC107655822,LOC107548357,LOC107709455,LOC107702298,LOC107750476
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12778589 ~ 12794404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243785.1
CTGCTCCGCTGCAGCTGCTCGGCGAATGAATGGCATCCTTCTCAGCATCACGTAAACGCCGACGGGGGGGAGCGAAAGCATCTTCCACTCGTGTTCGCCTCGGACGGAGCAGGCGGAAAACCCCACTCCGTTCATGATTAATTTATACCTTTATCACACAGCAGGTTGCAGCACATCTGATCGTTTTTACGAAACGGCTCGGTGTCCGGCcgtatgaataaaaaaagagaataccCCCTTTTGTCGGTGACAGAGACTCACCGTTCAAACAGCATGCAATAATTCCATTCAATGAAGGAACCGGAGCCGGGAAAGACAGCATGAAGTTACAAATATCCGGTCTTGTGTTCGCAATGGCAGTAGCCTATGCAACGATAGAGGcTCCTGAAGAGTTTGTCTCACTAGCTGAGATGGAGGACACGTTGTTGAGGAATCTTTTTCGGGGGTATCAGAAGTGGGTGAGACCTATCCTTCACGCCAACGACACGATCACCGTTCGCTTCGGTCTGAAGATCTCGCAGCTGGTGGATGTGGATGAAAAGAATCAACTAATGACTACAAATGTCTGGTTGTGGCAGGAGTGGACAGACTATAAGCTGCGGTGGAATCCAGAAGATTATGGTGGAATCACATCCATCAGAGTGCCCTCAGAAACTATCTGGCTGCCAGACATCGTCCTTTATGagaaCGCTGATGGCCGATTTGAGGGTTCTCTAATGACCAAAGCCATTGTAAGGTTTAATGGCACCATCATGTGGACTCCTCCTGCCAGCTATAAATCCTCCTGTACCATGGATGTCACGTTTTTCCCTTTCGACAGACAGAACTGCTCGATGAAGTTTGGGTCGTGGACATACGATGGCACTATGGTGGACTTGACCCTGGTGGACGCATACGTAGACCGTAAAGACTTCTTTGATAATGGCGAGTGGGAAATACTCAACGCCACTGGCCAGAGAGGCAGTCGGCGGGACGGCATTTACTCCTATCCTTACGtcacatattcattcattcttaaaCGTCTTCCTCTCTTTTACACACTCTTTCTCATCATCCCATGTCTCGGTCTGTCGTTTCTCACCGTGCTGGTCTTCTACCTCCCCTCGGACGAAGGAGAAAAGCTTTCCCTCTCTACCTCTGTCCTTGTGTCTCTCACTGTGTTTCTTCTCGTCATTGAAGAGATCATTCCGTCTTCCTCTAAAGTCATTCCTCTGATAGGAGAGTATCTGCTCTTTATTATGATCTTCGTCACGTTCTCTATCATAGTAactgtttttgtcattaatgTCCATCATCGCTCTTCTGCCACATACCATCCCATGGCACCGTGGGTTAAGAGTCTTTTCCTCCAGAGATTACCCAGACTGCTCTGCATGAGGGGACACACTGATCGTTATCAGTACCCAGACATCGAGCTGCGGAGCCCAGAGCCAAAAAGAGGGATGAAAAGAGGGCAACAAAAGAGTGCTGGAGGAGGACGAGGGGGGTTAAAGGAAGATGAGAACCAGGCTTGGATTGCCCTGTTGGAGAAAGCCACTTACTCAGTGCACTACATTTCCAGACACATCAAGAAGGAACACTTCATCAGAGAGGTTGTTCAGGACTGGAAGTTTGTGGCTCAGGTGTTGGACCGGATCTTCCTCTGGGTCTTTCTCACGGTTTCTGTGCTTGGGACCATCCTCATCTTCACCCCAGCTCTGCAGATGTACCTCAGCACATCTTAGAGATTTCAGCCAACAGAATCTCTTATGACATTCCTATGACCTCTGAAATATGTGTAGTTCCCACAACATTACAGTAATCCCTCTTCTGGCCTAACCACATCTGTAATCCCCTCCGAATTCAGCCTCTATCTCTCCTTCCTAGACGCTGTGTTCAATAGTCagaatgaaaatggaaaaactcAGCTAAAATGAAGTTCTGGAATTTTCTGCCCTTTTAACGCAAAACTAAAAGGCGGCTTATACAGTTGAGGGAGTTTGGATCTGTGTAATCTCTCTAAGGGGATCATGGTTTTAAAGATCTTCAGTAAGTTGGCATTACTGTGTAAAAGGTATAACCACCTTTTTATGCCTCTCATTTAGCTTtcggccattttttttttatttagatcagGTTAAAATGTGTCATTGTCCATGTAAATACCATTTTActttatgattttatgattCTGCTTACTAGGTAGCAAACCTATTAAAAAACTGTCTGTTtgcagtaaatgtaaaaaaaacatatcactGTCCAGATGAATAAAAttgttaattcattttattaataatgtagcGTTATTTCTGTAAGTCTGGATGACGATCAGTTATAATAGTATCTCTTATTAGCACAGGTGACATTTACTGTACAGTCTatcatctgtttttaaaatactgttaaatgaaGTAGGGTCATGCCTTGGATGAtattatgcatatgtaaattTTATGCAGATGAGACCATGCATAATACAAAGCGCATGCGTATGTGTCTACAACTggaatttataaataaaactctGCAAGATTTCGGGCTCATATATCGTTTTATAAATCTGCTATTTATGCCCATGCATATTTTTAGCAATGTCAAGCATCTTTACCCCTAAACCCTTGAAGATACTGTAGCTGATTTAAAAGGAGAGGGGAACCGATCACGACTTGTCTTGGCACCATTAGCAAGGACTGTATTACGACAAGGGTCTTTATgacaattatacaaataaagtttttagcGATC
>XM_043243793.1
CTGCTCCGCTGCAGCTGCTCGGCGAATGAATGGCATCCTTCTCAGCATCACGTAAACGCCGACGGGGGGGAGCGAAAGCATCTTCCACTCGTGTTCGCCTCGGACGGAGCAGGCGGAAAACCCCACTCCGTTCATGATTAATTTATACCTTTATCACACAGCAGGTTGCAGCACATCTGATCGTTTTTACGAAACGGCTCGGTGTCCGGCcgtatgaataaaaaaagagaataccCCCTTTTGTCGGTGACAGAGACTCACCGTTCAAACAGCATGCAATAATTCCATTCAATGAAGGAACCGGAGCCGGGAAAGACAGCATGAAGTTACAAATATCCGGTCTTGTGTTCGCAATGGCAGTAGCCTATGCAACGATAGAGGcTCCTGAAGAGTTTGTCTCACTAGCTGAGATGGAGGACACGTTGTTGAGGAATCTTTTTCGGGGGTATCAGAAGTGGGTGAGACCTATCCTTCACGCCAACGACACGATCACCGTTCGCTTCGGTCTGAAGATCTCGCAGCTGGTGGATGTGGATGAAAAGAATCAACTAATGACTACAAATGTCTGGTTGTGGCAGGAGTGGACAGACTATAAGCTGCGGTGGAATCCAGAAGATTATGGTGGAATCACATCCATCAGAGTGCCCTCAGAAACTATCTGGCTGCCAGACATCGTCCTTTATGagaaCGCTGATGGCCGATTTGAGGGTTCTCTAATGACCAAAGCCATTGTAAGGTTTAATGGCACCATCATGTGGACTCCTCCTGCCAGCTATAAATCCTCCTGTACCATGGATGTCACGTTTTTCCCTTTCGACAGACAGAACTGCTCGATGAAGTTTGGGTCGTGGACATACGATGGCACTATGGTGGACTTGACCCTGGTGGACGCATACGTAGACCGTAAAGACTTCTTTGATAATGGCGAGTGGGAAATACTCAACGCCACTGGCCAGAGAGGCAGTCGGCGGGACGGCATTTACTCCTATCCTTACGtcacatattcattcattcttaaaCGTCTTCCTCTCTTTTACACACTCTTTCTCATCATCCCATGTCTCGGTCTGTCGTTTCTCACCGTGCTGGTCTTCTACCTCCCCTCGGACGAAGGAGAAAAGCTTTCCCTCTCTACCTCTGTCCTTGTGTCTCTCACTGTGTTTCTTCTCGTCATTGAAGAGATCATTCCGTCTTCCTCTAAAGTCATTCCTCTGATAGGAGAGTATCTGCTCTTTATTATGATCTTCGTCACGTTCTCTATCATAGTAactgtttttgtcattaatgTCCATCATCGCTCTTCTGCCACATACCATCCCATGGCACCGTGGGTTAAGAGTCTTTTCCTCCAGAGATTACCCAGACTGCTCTGCATGAGGGGACACACTGATCGTTATCAGTACCCAGACATCGAGCTGCGGAGCCCAGAGCCAAAAAGAGGGATGAAAAGAGGGCAACAAAAGAGTGCTGGAGGAGGACGAGGGGGGTTAAAGGAAGATGAGAACCAGGCTTGGATTGCCCTGTTGGAGAAAGCCACTTACTCAGTGCACTACATTTCCAGACACATCAAGAAGGAACACTTCATCAGAGAGGTTGTTCAGGACTGGAAGTTTGTGGCTCAGGTGTTGGACCGGATCTTCCTCTGGGTCTTTCTCACGGTTTCTGTGCTTGGGACCATCCTCATCTTCACCCCAGCTCTGCAGATGTACCTCAGCACATCTTAGAGAATATGTGTAGTTCCCACAACATTACAGTAATCCCTCTTCTGGCCTAACCACATCTGTAATCCCCTCCGAATTCAGCCTCTATCTCTCCTTCCTAGACGCTGTGTTCAATAGTCagaatgaaaatggaaaaactcAGCTAAAATGAAGTTCTGGAATTTTCTGCCCTTTTAACGCAAAACTAAAAGGCGGCTTATACAGTTGAGGGAGTTTGGATCTGTGTAATCTCTCTAAGGGGATCATGGTTTTAAAGATCTTCAGTAAGTTGGCATTACTGTGTAAAAGGTATAACCACCTTTTTATGCCTCTCATTTAGCTTtcggccattttttttttatttagatcagGTTAAAATGTGTCATTGTCCATGTAAATACCATTTTActttatgattttatgattCTGCTTACTAGGTAGCAAACCTATTAAAAAACTGTCTGTTtgcagtaaatgtaaaaaaaacatatcactGTCCAGATGAATAAAAttgttaattcattttattaataatgtagcGTTATTTCTGTAAGTCTGGATGACGATCAGTTATAATAGTATCTCTTATTAGCACAGGTGACATTTACTGTACAGTCTatcatctgtttttaaaatactgttaaatgaaGTAGGGTCATGCCTTGGATGAtattatgcatatgtaaattTTATGCAGATGAGACCATGCATAATACAAAGCGCATGCGTATGTGTCTACAACTggaatttataaataaaactctGCAAGATTTCGGGCTCATATATCGTTTTATAAATCTGCTATTTATGCCCATGCATATTTTTAGCAATGTCAAGCATCTTTACCCCTAAACCCTTGAAGATACTGTAGCTGATTTAAAAGGAGAGGGGAACCGATCACGACTTGTCTTGGCACCATTAGCAAGGACTGTATTACGACAAGGGTCTTTATgacaattatacaaataaagtttttagcGATC

Function

symbol description
chrnb3a Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

NR:

description
neuronal acetylcholine receptor subunit beta-3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04814 CHRNB3; nicotinic acetylcholine receptor beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243785.1 True 2727 mRNA 0.44 6 12778589 12794404
XM_043243793.1 False 2683 mRNA 0.44 7 12778589 12794404

Neighbor

gene id symbol gene type direction distance location
chrna8 LOC107709454,LOC107655813,LOC107548356,LOC107562618,LOC107702399,LOC108410819 coding downstream 5759 12724574 ~ 12772830 (-)
LOC122348170 frmpd1,LOC107709451,LOC107655878,LOC107548301,LOC107750435,LOC107702397,LOC107570223 coding downstream 135013 12618483 ~ 12643576 (-)
melk melk,LOC107709443,LOC107702285,LOC107570222 coding downstream 161307 12607766 ~ 12617282 (-)
zcchc7 LOC107709449,LOC107655886,LOC107548354 coding downstream 234448 12499771 ~ 12544141 (-)
adamtsl7 LOC107709448,LOC107750434,LOC107702297,LOC107570220 coding downstream 284264 12477518 ~ 12494325 (-)
chrna6 chrna6,LOC107709456,LOC107655806,LOC107750436,LOC108260984,LOC108412407 coding upstream 22351 12816755 ~ 12823474 (-)
chrnb5a chrnb2a,LOC107548317,LOC107656869,LOC107709434,LOC107702400,LOC107562601 coding upstream 47848 12842252 ~ 12854994 (-)
uchl1 uchl1,LOC107709457,LOC107548360,LOC107701450,LOC107750438 coding upstream 78801 12873205 ~ 12876398 (-)
fgfbp1b LOC107709462,LOC107548318 coding upstream 98231 12892635 ~ 12894247 (-)
fgfbp2b LOC107750470,LOC107702288 coding upstream 103163 12897567 ~ 12899663 (-)
G2891 NA non-coding downstream 160547 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 183295 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 228350 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 323017 12455354 ~ 12455572 (-)
G2841 NA non-coding downstream 323820 12454231 ~ 12454769 (-)
G3020 NA non-coding upstream 92372 12886776 ~ 12887653 (-)
G3070 NA non-coding upstream 411383 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 500293 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 508349 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 594030 13388434 ~ 13388506 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 412481 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 661206 12097910 ~ 12117383 (-)
apela NA other downstream 989923 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 1197872 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 1265756 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 109795 12904199 ~ 12926482 (-)
smim18 NA other upstream 174689 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 360082 13154486 ~ 13159444 (-)
G3072 NA other upstream 496892 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 1035059 13829463 ~ 13842664 (-)

Expression


Co-expression Network