ldb2b (ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309)


Basic Information

Item Value
gene id ldb2b
gene name ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12944109 ~ 12956262 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243880.1
ctctcctctcctctcacaGCAGAGCGCGCGTGTGATTTGACAGTCGCATCTCTCCTTGTGTCCGggagcgcgcgtgtgtgtgtatgtttacgATCGTCGTGCTCCACGTGCTGCGTGTGGATGCGCTCCTCGCGCGCTGTCGGTAACAGAAACCATGACCGGCGCGCCGCGCGACCCCTTCTACTCCTCTCCGTTCGGTCCGTTTTACCGGAGACACGCGCCCTACCCGGTGCAGCCGGAGTACCGGATGCACGAGCTCAACAAACGGCTCCAGTCCCGGCCTGAGGACTGTGATATTCTGTGGTGGGATGCGTTCTGCACCGAGTTCTTTGAAGAAGATGCCACACTGACTCTTTCTTTCTGCCTCGAGGAGGGACCAAAGACGTACACCATCGGGCGCACCCTGATCCCTCGTTACTTCAGTTCTCTGTTCGAAGGAGGAGTCTATGAGTTGTTTTTTGAGCTGAAACAAACAAAGGAGTCGTTCAACAACTCAACTATTACCGTCGACTCTCATCACTGTACTATGACAACACAACACGGCAAACCTACGTTCACTAAgGTGTGTACAGAAGGTCGTCTGATTCTTGTGTTCACCTTTGATGACCTCATGAGAATCAAAACATGGCACTTCACTATTACACACTACAGTGAGCTCATTCCTCGCAGCGTCTTGGCTGTAAATGCGCAAGACCCTGGAGCTCTGGAACAACTGTCCAAAAACATCAGTCGAGTGGGACTTACCAACCTCACGCTGAACTACCTCAGAttGTGTGTGATTCTAGAGCCGATGCAGGAGCTCATGTCTAGGCATAAGACATATGGACTGAGTCCCAGAGACTGCCTAAAGACCTGCCTCTTTCACCAGTGGCAGAGAATGACAACACCaccagttgGACCCTCGCCCAGCTTCAAGACAGAAATATTCCCCTCTAAttccaaaaaatCAGAGCCAGCCAAACCAGCAACAAAGAGACGGAGGAGGAGGAACTCAGCTGGGAGCGCGTCCAATAACAGCACAGGAAACAGCAAGAAGCGCAGCCCAGCCAATAACTTCAGCCTACCCTCACAGGATGTGATGGTGGTAGGGGAGCCCTCTCTAATGGGAGGGGAGTTGGGTGACGTGGACGAGCGTTTGATCACACGCCTCGAGAACGAACAGTACGACCCCGTCAACGGTCTCCATGATGACGGTCTCCATGACTACACCAACTCACCGACACTTGGAAACGGCAGCTCCTGGAATGGccagcaccctagcaaccaagaCAGTAAGCCTGATACCATGGCAACGCAGCAGTTGGAATAATGTGATCTGACATTGGGTAGCTATGGCAACGGTGCTGTCAAGGGATGGGGGTATTTTCAACTGTAGAGGAGAAATTGCaggagagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgctagCGTTTATGTTGGTGTGACACGGTATTCCATACTTGAGACATACAGCTTCAACCATTTAGTTTAAGTATTccgaaaaaataaaagatactGCAAGCCTTGTACATATACAGATCTATCAGTTCATTTCATATCAGAATTTTTCAGCCCTTTTTTAAAGCTCAGTGGATGTCTCGGCTTCATTCTGTACTGTACTGTTTGGTTTCGCTACAACAACCGGATGAAAAAAGTGAACGCTAAAGCgttttgagcataaatgcaGATATCTTTATTGCTCtaaattttaatgcatattgtaAAACACATGCAGATTTGTGCTGTTAgttgtgtattttatgtatggttttcaataatttgcattaataaaatgtgtttggttATGA
>XM_043243887.1
cctctcctctcctctcacaGCAGAGCGCGCGTGTGATTTGACAGTCGCATCTCTCCTTGTGTCCGggagcgcgcgtgtgtgtgtatgtttacgATCGTCGTGCTCCACGTGCTGCGTGTGGATGCGCTCCTCGCGCGCTGTCGGTAACAGAAACCATGACCGGCGCGCCGCGCGACCCCTTCTACTCCTCTCCGTTCGGTCCGTTTTACCGGAGACACGCGCCCTACCCGGTGCAGCCGGAGTACCGGATGCACGAGCTCAACAAACGGCTCCAGTCCCGGCCTGAGGACTGTGATATTCTGTGGTGGGATGCGTTCTGCACCGAGTTCTTTGAAGAAGATGCCACACTGACTCTTTCTTTCTGCCTCGAGGAGGGACCAAAGACGTACACCATCGGGCGCACCCTGATCCCTCGTTACTTCAGTTCTCTGTTCGAAGGAGGAGTCTATGAGTTGTTTTTTGAGCTGAAACAAACAAAGGAGTCGTTCAACAACTCAACTATTACCGTCGACTCTCATCACTGTACTATGACAACACAACACGGCAAACCTACGTTCACTAAgGTGTGTACAGAAGGTCGTCTGATTCTTGTGTTCACCTTTGATGACCTCATGAGAATCAAAACATGGCACTTCACTATTACACACTACAGTGAGCTCATTCCTCGCAGCGTCTTGGCTGTAAATGCGCAAGACCCTGGAGCTCTGGAACAACTGTCCAAAAACATCAGTCGAGTGGGACTTACCAACCTCACGCTGAACTACCTCAGAttGTGTGTGATTCTAGAGCCGATGCAGGAGCTCATGTCTAGGCATAAGACATATGGACTGAGTCCCAGAGACTGCCTAAAGACCTGCCTCTTTCACCAGTGGCAGAGAATGACAACACCaccagttgGACCCTCGCCCAGCTTCAAGACAGAAATATTCCCCTCTAAttccaaaaaatCAGAGCCAGCCAAACCAGCAACAAAGAGACGGAGGAGGAGGAACTCAGCTGGGAGCGCGTCCAATAACAGCACAGGAAACAGCAAGAAGCGCAGCCCAGCCAATAACTTCAGCCTACCCTCACAGCCTAAACGTGTCGCCGGGGAAACGAGGGGTGGCGGGTGGCTGGAGGCGGAGCTTAGGATGTGATGGTGGTAGGGGAGCCCTCTCTAATGGGAGGGGAGTTGGGTGACGTGGACGAGCGTTTGATCACACGCCTCGAGAACGAACAGTACGACCCCGTCAACGGTCTCCATGATGACGGTCTCCATGACT
>XM_043243898.1
cctctcctctcctctcacaGCAGAGCGCGCGTGTGATTTGACAGTCGCATCTCTCCTTGTGTCCGggagcgcgcgtgtgtgtgtatgtttacgATCGTCGTGCTCCACGTGCTGCGTGTGGATGCGCTCCTCGCGCGCTGTCGGTAACAGAAACCATGACCGGCGCGCCGCGCGACCCCTTCTACTCCTCTCCGTTCGGTCCGTTTTACCGGAGACACGCGCCCTACCCGGTGCAGCCGGAGTACCGGATGCACGAGCTCAACAAACGGCTCCAGTCCCGGCCTGAGGACTGTGATATTCTGTGGTGGGATGCGTTCTGCACCGAGTTCTTTGAAGAAGATGCCACACTGACTCTTTCTTTCTGCCTCGAGGAGGGACCAAAGACGTACACCATCGGGCGCACCCTGATCCCTCGTTACTTCAGTTCTCTGTTCGAAGGAGGAGTCTATGAGTTGTTTTTTGAGCTGAAACAAACAAAGGAGTCGTTCAACAACTCAACTATTACCGTCGACTCTCATCACTGTACTATGACAACACAACACGGCAAACCTACGTTCACTAAgGTGTGTACAGAAGGTCGTCTGATTCTTGTGTTCACCTTTGATGACCTCATGAGAATCAAAACATGGCACTTCACTATTACACACTACAGTGAGCTCATTCCTCGCAGCGTCTTGGCTGTAAATGCGCAAGACCCTGGAGCTCTGGAACAACTGTCCAAAAACATCAGTCGAGTGGGACTTACCAACCTCACGCTGAACTACCTCAGAttGTGTGTGATTCTAGAGCCGATGCAGGAGCTCATGTCTAGGCATAAGACATATGGACTGAGTCCCAGAGACTGCCTAAAGACCTGCCTCTTTCACCAGTGGCAGAGAATGACAACACCaccagttgGACCCTCGCCCAGCTTCAAGACAGAAATATTCCCCTCTAAttccaaaaaatCAGAGCCAGCCAAACCAGCAACAAAGAGACGGAGGAGGAGGAACTCAGCTGGGAGCGCGTCCAATAACAGCACAGGAAACAGCAAGAAGCGCAGCCCAGCCAATAACTTCAGCCTACCCTCACAGCCTAAACGTGTCGCCGGGGAAACGAGGGGTGGCGGGTGGCTGGAGGCGGAGCTTAGGTAGGATGTGATGGTGGTAGGGGAGCCCTCTCTAATGGGAGGGGAGTTGGGTGACGTGGACGAGCGTTTGATCACACGCCTCGAGAACGAACAGTACGACCCCGTCAACGGTCTCCATGATGACGGTCTCCATGACTACACC

Function

symbol description
ldb2b Predicted to enable LIM domain binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in fin bud; head; paraxial mesoderm; spinal cord neural tube; and telencephalon. Orthologous to human LDB2 (LIM domain binding 2).

NR:

description
PREDICTED: LIM domain-binding protein 2-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0030274 LIM domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243880.1 True 1813 mRNA 0.49 9 12944109 12956261
XM_043243887.1 False 1262 mRNA 0.54 10 12944717 12956262
XM_043243898.1 False 1271 mRNA 0.54 10 12944712 12956262

Neighbor

gene id symbol gene type direction distance location
tapt1b tapt1,LOC107750443,LOC107702406,LOC107671913,LOC108434341,LOC105908524 coding downstream 692 12929116 ~ 12943417 (-)
fgfbp2b LOC107750470,LOC107702288 coding downstream 44446 12897567 ~ 12899663 (-)
fgfbp1b LOC107709462,LOC107548318 coding downstream 49862 12892635 ~ 12894247 (-)
uchl1 uchl1,LOC107709457,LOC107548360,LOC107701450,LOC107750438 coding downstream 67711 12873205 ~ 12876398 (-)
chrnb5a chrnb2a,LOC107548317,LOC107656869,LOC107709434,LOC107702400,LOC107562601 coding downstream 89115 12842252 ~ 12854994 (-)
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding upstream 7336 12963598 ~ 12966507 (-)
adgrl3.1 adgrl3.1,LOC107709467,LOC107671918,LOC107702411 coding upstream 36982 12993244 ~ 13084503 (-)
rfc1 rfc1,LOC107709439,LOC107700290,LOC107757601 coding upstream 167609 13123871 ~ 13136414 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 181165 13137427 ~ 13141344 (-)
ugdh ugdh,LOC107757604,LOC107700292 coding upstream 191182 13147444 ~ 13154024 (-)
G3020 NA non-coding downstream 56456 12886776 ~ 12887653 (-)
G2891 NA non-coding downstream 326067 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 348815 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 393870 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 488537 12455354 ~ 12455572 (-)
G3070 NA non-coding upstream 249525 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 338435 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 346491 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 432172 13388434 ~ 13388506 (-)
trnar-ucg_69 NA non-coding upstream 432991 13389253 ~ 13389325 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 17627 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 578001 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 826726 12097910 ~ 12117383 (-)
apela NA other downstream 1155443 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 1363392 11514151 ~ 11580717 (-)
smim18 NA other upstream 12831 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 198224 13154486 ~ 13159444 (-)
G3072 NA other upstream 335034 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 873201 13829463 ~ 13842664 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 925631 13881893 ~ 13895284 (-)

Expression


Co-expression Network