gtf2e2 (gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408)


Basic Information

Item Value
gene id gtf2e2
gene name gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12966765 ~ 12977670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243931.1
agctcGTTCTTCCGCAGGAAATTCATGTAGTCGTAGCATCGCTAGCATTCAGTGACAAGCTTCCTCATTTAACCTCTTCAATAAGTTGACAGCATATGGTCACTGGAAATAATATTTAGGCTTTAGCTTAACTGTTTCTCTCTGAGAGGGAAGGCAGTGAGATATCCAGGATGGATAAAGCTCTGCTCAGAGAGCGAGAGCTCTTTAAAAAGAGAGCTCTGTCCACTCCTGTAGTTGAGAAGAGACCGGCAACCTCTGAGGCCTCTGGATCCTccaagaagaaaaagagcaaacCGGACAAAGAGAGCTCGTCATCCTCCAAAAACAACACAGATCCCAGCAATGGCTCCTTCAATCTCAAAGCACTTTCTGGGAGTTCAGGATACAAATTTGGAGTTTTGGCCCGCATCGTCAACTATATGAAGACCAGGCACCAGAGAGGTGATACTCATCATCTGACTCTGGATGAAATTCTGGATGAGACCAAGCTGCTGGACATCGGCATGAAGCAGAAACAATGGCTCATGagcgagGCATTAGCAAGTAATCCTAAAATTGATGTGCGGGAAGGGAAATATGCCTTTAAACCCAAATATCATCTGAAGGATAAGAAAGCTCTGCTAAGACTACTGGACAAACACGATCAGCTGGGACTAGGAGGAGTGTTACTAGATGATGTTGAAGAGGGTCTGCCAAACTCGGCCAAGGCTATAAAGGCACTTGGGGATCAGATCATATTTGTGACCAGGCCAGACAAGAAGAAGGTTCTTTTCTACAATGACAAACACTGTCAGTTTATTGTTGATGAAGAGTTTCAGAAGCTGTGGCGCAGCGTTCCTGTTGATTCCATAGATGAGGAAAAGATCGAAGAGTACCTGAAGAAACAGGGCATATCGTCCATGCAGGAGACGGGACCAAAGAAAATCGCACCCATTCAGAAGAGGAAGAAACCTGGAACACAGAAAAAGAGACGGTTTAAGACTCATAATGATCATCTGAATGGCGTTCTGGAGGACTACTCTGAGGGAGTTCCCTCCAAgaagtgacacacacacacacacacacgcagcttTAAAGGCTCAAAGTGACAAGACTGATATCTGTGTGATGTTTGTATATCTGATCTAATGTCTTATTGCCAAAACCATAAAgacatgcagacacacacacacacacacacacacacacaccttaaaaCTGTACTGAGTGACACGAATGTGAACGGATTGTAAATATTTCCTTCCACTgttatgttttactttttgctAGTTCTTTAACAATGGACAACTAAGCTcttctttttttagatttaaagatTAAACAAGAGCAATCAAACCACA

Function

symbol description
gtf2e2 Predicted to enable DNA binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIE complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 6. Orthologous to human GTF2E2 (general transcription factor IIE subunit 2).

NR:

description
general transcription factor IIE, polypeptide 2-1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005673 transcription factor TFIIE complex cellular_component

KEGG:

id description
K03137 TFIIE2, GTF2E2, TFA2; transcription initiation factor TFIIE subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243931.1 True 1340 mRNA 0.43 8 12966765 12977670

Neighbor

gene id symbol gene type direction distance location
zmynd10 zmynd10,LOC107702405 coding upstream 61476 12899626 ~ 12905289 (+)
anxa5b anxa5b,LOC107709458,LOC107671923,LOC107548361,LOC107702401 coding upstream 79111 12881119 ~ 12887654 (+)
pax5 pax5,LOC107702396 coding upstream 375875 12549928 ~ 12590890 (+)
LOC122342830 NA coding upstream 634863 12328136 ~ 12331902 (+)
LOC122351007 NA coding upstream 644307 12318615 ~ 12322458 (+)
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding downstream 108179 13085849 ~ 13123735 (+)
lias lias coding downstream 163909 13141579 ~ 13147369 (+)
ube2kb ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303 coding downstream 184153 13161823 ~ 13167599 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding downstream 212995 13190665 ~ 13201536 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 232924 13210594 ~ 13216696 (+)
G2948 NA non-coding upstream 29295 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 93096 12794867 ~ 12873669 (+)
LOC122348548 NA non-coding upstream 107414 12854762 ~ 12859351 (+)
G2847 NA non-coding upstream 468896 12497641 ~ 12497869 (+)
G2821 NA non-coding upstream 526657 12439732 ~ 12440108 (+)
G2967 NA non-coding downstream 45758 13023428 ~ 13155797 (+)
G2981 NA non-coding downstream 146202 13123872 ~ 13124595 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding downstream 192417 13170087 ~ 13171933 (+)
LOC122348541 NA non-coding downstream 316447 13294117 ~ 13295055 (+)
LOC122334852 NA non-coding downstream 319202 13296872 ~ 13300061 (+)
dnah6 dnah6,LOC106610484 other upstream 242307 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 308258 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1122705 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1183695 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 1241865 11711940 ~ 11724900 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other downstream 225389 13203059 ~ 13205716 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 538538 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 1136761 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1502528 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1624642 14602312 ~ 14603888 (+)

Expression


Co-expression Network