uchl1 (uchl1,LOC107709457,LOC107548360,LOC107701450,LOC107750438)


Basic Information

Item Value
gene id uchl1
gene name uchl1,LOC107709457,LOC107548360,LOC107701450,LOC107750438
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12873205 ~ 12876398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243971.1
GAGTAAATGGAATATGACCGGTCGCATATATGATCCTCGTGCTCCTTCGGTCTGGTTTGTGTTTTGTCGGGCGGCGCCTTTCTGAACTCTGGGAAGTGACACTCAAGACCGTCTGCAATCATGGAGTGGAAGCCTATGGAAATAAACCCGGAGATGCTGAATAAGGTGTTAAGCAAGTTGGGTGTGGGCTCGAGTTGGCGTTTTGTGGACGTCTTGGGTCTGGAAGATGAGTCTTTGTCAGGGGTGCCCTCACCCTGCTGTGCCATGATGCTGCTCTTCCCTTTAACGCAACAGCACGAGGATTTTCGTTCCAAACAGTCTGTAGACGACTCTAAAAGTGTGTATTTCCTGAAACAAACTGTGGTCAACTCTTGTGGAACTGTGGGTTTGGTACATGCTGTGGCCAACAACCAGGACAGTATTGATTTTGACAGTGACTCTGCACTGAAGAAATTTCTAGAAGCCACCTCAGGGAAGTCTGCTGCAGAAAGAGCCAAAGAACTTGAACAAAATAAGgcCATCCAGGAAACTCATGATGCGGTTGCTGATGAAGGACAGTGTCGGCCAGAGGCAGACAAAGTCAACTTCCATTTCATTACATTTGTCAATGTAAATGGTCAGCTTTATGAGCTGGATGGCAGAATGGATGGACCCGTGAAGCATGGACCTACAAAACCAGAAAGCTTTGTCATGGATGCGGCGAGGGTGTGCCGTGAGTTTATGGAGCGAGAGAAAGGGGAGGTGCGTTTCTCCGCCGTGGCTCTCTCCAAAGCCTGAGAGGAGCCAGACCACTTGACCAGAACCATGAGCAGTTTCGGAAAACCCTTCATGCACTAACTAATACAGAGCACAGATTCTAAACCTATACCATGCCTTGATACATGCTACACAAACTGCCTGCCTGTCTGACTGTGAATTAATgtcatttctcatttatttccactatttatttacttaaactACTATGCTCTTTGTTaacatcagtatttatttttagcttttttttttttttgatgtaccTCATTTAGTTCTAGTTCTAATATTTTTGGGCACTTTTTTTTGATTGGGGAAGGGGGGGGCAACAGTTAGCAGAACTTTAATGTGAACTCATAAGCTTGGAGGCatatgttcaaaataaacaaaaccgaGAAGGGTAATTGGC

Function

symbol description
uchl1 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; and hereditary spastic paraplegia. Orthologous to human UCHL1 (ubiquitin C-terminal hydrolase L1).

NR:

description
ubiquitin carboxyl-terminal hydrolase isozyme L1-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K05611 UCHL1; ubiquitin carboxyl-terminal hydrolase L1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243971.1 True 1162 mRNA 0.45 9 12873205 12876398

Neighbor

gene id symbol gene type direction distance location
chrnb5a chrnb2a,LOC107548317,LOC107656869,LOC107709434,LOC107702400,LOC107562601 coding downstream 18211 12842252 ~ 12854994 (-)
chrna6 chrna6,LOC107709456,LOC107655806,LOC107750436,LOC108260984,LOC108412407 coding downstream 49731 12816755 ~ 12823474 (-)
chrnb3a chrnb3a,LOC107562617,LOC107655822,LOC107548357,LOC107709455,LOC107702298,LOC107750476 coding downstream 78801 12778589 ~ 12794404 (-)
chrna8 LOC107709454,LOC107655813,LOC107548356,LOC107562618,LOC107702399,LOC108410819 coding downstream 100375 12724574 ~ 12772830 (-)
LOC122348170 frmpd1,LOC107709451,LOC107655878,LOC107548301,LOC107750435,LOC107702397,LOC107570223 coding downstream 229629 12618483 ~ 12643576 (-)
fgfbp1b LOC107709462,LOC107548318 coding upstream 16237 12892635 ~ 12894247 (-)
fgfbp2b LOC107750470,LOC107702288 coding upstream 21169 12897567 ~ 12899663 (-)
tapt1b tapt1,LOC107750443,LOC107702406,LOC107671913,LOC108434341,LOC105908524 coding upstream 52718 12929116 ~ 12943417 (-)
ldb2b ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309 coding upstream 67711 12944109 ~ 12956262 (-)
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding upstream 87200 12963598 ~ 12966507 (-)
G2891 NA non-coding downstream 255163 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 277911 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 322966 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 417633 12455354 ~ 12455572 (-)
G2841 NA non-coding downstream 418436 12454231 ~ 12454769 (-)
G3020 NA non-coding upstream 10378 12886776 ~ 12887653 (-)
G3070 NA non-coding upstream 329389 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 418299 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 426355 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 512036 13388434 ~ 13388506 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 507097 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 755822 12097910 ~ 12117383 (-)
apela NA other downstream 1084539 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 1292488 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 1360372 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 27801 12904199 ~ 12926482 (-)
smim18 NA other upstream 92695 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 278088 13154486 ~ 13159444 (-)
G3072 NA other upstream 414898 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 953065 13829463 ~ 13842664 (-)

Expression


Co-expression Network