rpl9 (rpl9,LOC107671920,LOC107700291,LOC107709470)


Basic Information

Item Value
gene id rpl9
gene name rpl9,LOC107671920,LOC107700291,LOC107709470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13137427 ~ 13141344 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244042.1
CTTCCTTTCCCCCTTAATCAGCGAGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCCTCCAACGTTGAGGTGTCCCTCAAGGGCCGCACAGTTGTTGTGAAGGGACCCCGTGGAGTTCTCCGCCGGGAGTTCAGTCACATTAACCTGGAACTCAGTCTTTTGGGCAAGAGACAGAAGAAGCTGCGTGTGGACAAATGGTGGGGTAACAGGAAGGAGTTGGCCACAGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGGGTCACCCTGGGCTTCAGGTACAAGATGCGATCTGTATATGCCCACTTCCCCATTAATGTGGTGATTCAGGAGAACGGCTCACTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGAAagGTGTGTCATGCGCAGTGTCTGCTGCTCAAAAAGATGAGCTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCTGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGATGGTATTTACGTCTCAGAGAAGGGCACTGTAGTGGATCCGGAGTCGTAGAGAACACGTGAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGAAAGAAGGACATCCGGAAGTTCCTGGATGGTATCTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAACCATA

Function

symbol description
rpl9 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).

NR:

description
60S ribosomal protein L9

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02940 RP-L9e, RPL9; large subunit ribosomal protein L9e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244042.1 True 779 mRNA 0.50 8 13137427 13141344

Neighbor

gene id symbol gene type direction distance location
rfc1 rfc1,LOC107709439,LOC107700290,LOC107757601 coding downstream 1013 13123871 ~ 13136414 (-)
adgrl3.1 adgrl3.1,LOC107709467,LOC107671918,LOC107702411 coding downstream 52924 12993244 ~ 13084503 (-)
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding downstream 170920 12963598 ~ 12966507 (-)
ldb2b ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309 coding downstream 181165 12944109 ~ 12956262 (-)
tapt1b tapt1,LOC107750443,LOC107702406,LOC107671913,LOC108434341,LOC105908524 coding downstream 194010 12929116 ~ 12943417 (-)
ugdh ugdh,LOC107757604,LOC107700292 coding upstream 6100 13147444 ~ 13154024 (-)
pds5a pds5a,LOC107757607,LOC107700294 coding upstream 26815 13168159 ~ 13189762 (-)
trnar-ucg NA coding upstream 77050 13218394 ~ 13218468 (-)
trnar-ucg_1 NA coding upstream 77952 13219296 ~ 13219368 (-)
trnae-cuc NA coding upstream 79456 13220800 ~ 13220873 (-)
G3020 NA non-coding downstream 249774 12886776 ~ 12887653 (-)
G2891 NA non-coding downstream 519385 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 542133 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 587188 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 681855 12455354 ~ 12455572 (-)
G3070 NA non-coding upstream 64443 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 153353 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 161409 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 247090 13388434 ~ 13388506 (-)
trnar-ucg_69 NA non-coding upstream 247909 13389253 ~ 13389325 (-)
smim18 NA other downstream 164415 12969093 ~ 12973012 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 210945 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 771319 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 1020044 12097910 ~ 12117383 (-)
apela NA other downstream 1348761 11783629 ~ 11788666 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 13142 13154486 ~ 13159444 (-)
G3072 NA other upstream 149952 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 688119 13829463 ~ 13842664 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 740549 13881893 ~ 13895284 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 1520130 14661474 ~ 14687860 (-)

Expression


Co-expression Network