stn1 (obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065)


Basic Information

Item Value
gene id stn1
gene name obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23059632 ~ 23063350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244368.1
GCAGTGACTCAACTGCGCATAGAGcggaaaaacacaaacatggctTCTTGCGTTCGTCAGGCTCCAGAATTGTTTCATTGCCTCTCTTAGTTTTCGTCGCTTAGCTTTGTGCTGTCACAGTGATGTCCGATGGCAGCGAGTCCCGGAGATGCTGATGCTGATGAGCCGCCGTCTATGCTGTGGGGCCTGGACCCCGTCTTCTCAGCATACTCCAGACTCTACATCACCGACATCCTACAGATGAAAGAGTCCAGACAAGTACCTGGTGTTTATTTCTACAAGACTCACCCAATCTTTAAGGTGGATGTACTGGGGACGGTTGTTTACaagcgagagagagaagattTCTACTGCTATGGAGTAGATGATAGCACTGGTGTCATAAACTGTCTTTGTTGGAAGGATGAGAAATCGAGTGATCGAGgagaatcatttaaatCCAGATATCCTAGCGGACTCTCTAGAGGATTTAACATCGAAGATGAACTCAGACGGCTGAGGGAGGCTGAACGGAAGAGCGCCGTGCTGGAGATCGGAGAGCTGCTGAGGGTACGAGGAACCGTCAAAACCTCCAGGGATGTGAGGGAGATCAGCGCCACCTCCTTCTGTAAAGTAAGTGATCCTGTGATGGCAGAGCAGATATCGCGCATGCTGGAAATGCCTCAGCTTTACAGAAAGTGCTATGATCAGCCCTTCCAGATGCCAGGAGATGACCTGGGTAACACAGAagCAGGCGGTTCCTCACGTTTCCACTGTTTGCTTTCCCGGTCCGTTCTCACCCTTAAGGAGTTCTTCTCAGAGAAAGAGGTCGCCAGGTTTCGTTTATATGATGTGGAGTTCCTCTTACATCCGCTGATACAGAGTTCTTCAGCAGAACAGGAGTCAGATCAACCCGGGACGTCATTTGCCATGCAAACTCGAAACCTTCTGAAAGAGACTCTGAGCGTTCTCCAGGATGAGGGTCAGATATTCCGGAAAATACGGACGCAGGATGAAGTCTACAACGTAACAGAGCAAGACAAAGATCTTCACACAGCGATCATGGATGTATTAAGAGAGGATACCAAACGGGAAAAATATGCTGAGAAGGGATGCCACGTCCTGCATGTTCTGTCCAGCGTGAGGCAGCGCTACAGCCAAAACCTGAGTCGAGAGGTGCTGGAGGTTGCCCTGACTTTCTTAGAATGCAATAGTGACATAATAAGCACAACAGAAGCGCACTACACTGTTTTGTAGcatcgttttttttaattccataaaatataatcaaagcgttaaaaaaaacaagtagctGACAATCATGAagacataatattaaaaagttgttGTTGAAATCATTAAAGTACATTTCATacaaattttattgtttttatttatttatttatttattttttttaaacccccGTGGTTCAGCATTAAAAGAGCACACAGATGTACGGTATTTTCTTAAGTGTTATTTTTGACGCCAGTTTATCTCTGTAGTAGATTAAACAAACTTTGAATAATTGAGTATTTGTACCCTTTAGTCCAAATGTTATAGCCCTGttgaaaaggttttaaaataataggaGCTGGAAGCAACCCGTTTCCTTTCACTTCCATTATGCTGCAAAGAGTGTCCTGGGACTTTGTTGTTAAAGCTTCTAAGAATCCTTTCAGAAAGCTCCTAATTTATCTTAAAATTCTACATAGGATTTCTACACAtatatatccacacacacacacacacacacacacacacacacacacacatatatatataggatttctacacatgtgtatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacacacattttttccaGTTACCAAAGATGTTAGTGTACTTAATTTAGCGCTATAACATGTTGGAGATTGCATATCTCTAATAAAATGAGTCACAAACACGA
>XM_043244458.1
GCAGTGACTCAACTGCGCATAGAGcggaaaaacacaaacatggctTCTTGCGTTCGTCAGGCTCCAGAATTGTTTCATTGCCTCTCTTAGTTTTCGTCGCTTAGCTTTGTGCTGTCACAGTGATGTCCGATGGCAGCGAGTCCCGGAGATGCTGATGCTGATGAGCCGCCGTCTATGCTGTGGGGCCTGGACCCCGTCTTCTCAGCATACTCCAGACTCTACATCACCGACATCCTACAGATGAAAGAGTCCAGACAAGTACCTGGTGTTTATTTCTACAAGACTCACCCAATCTTTAAGGTGGATGTACTGGGGACGGTTGTTTACaagcgagagagagaagattTCTACTGCTATGGAGATGATAGCACTGGTGTCATAAACTGTCTTTGTTGGAAGGATGAGAAATCGAGTGATCGAGgagaatcatttaaatCCAGATATCCTAGCGGACTCTCTAGAGGATTTAACATCGAAGATGAACTCAGACGGCTGAGGGAGGCTGAACGGAAGAGCGCCGTGCTGGAGATCGGAGAGCTGCTGAGGGTACGAGGAACCGTCAAAACCTCCAGGGATGTGAGGGAGATCAGCGCCACCTCCTTCTGTAAAGTAAGTGATCCTGTGATGGCAGAGCAGATATCGCGCATGCTGGAAATGCCTCAGCTTTACAGAAAGTGCTATGATCAGCCCTTCCAGATGCCAGGAGATGACCTGGGTAACACAGAagCAGGCGGTTCCTCACGTTTCCACTGTTTGCTTTCCCGGTCCGTTCTCACCCTTAAGGAGTTCTTCTCAGAGAAAGAGGTCGCCAGGTTTCGTTTATATGATGTGGAGTTCCTCTTACATCCGCTGATACAGAGTTCTTCAGCAGAACAGGAGTCAGATCAACCCGGGACGTCATTTGCCATGCAAACTCGAAACCTTCTGAAAGAGACTCTGAGCGTTCTCCAGGATGAGGGTCAGATATTCCGGAAAATACGGACGCAGGATGAAGTCTACAACGTAACAGAGCAAGACAAAGATCTTCACACAGCGATCATGGATGTATTAAGAGAGGATACCAAACGGGAAAAATATGCTGAGAAGGGATGCCACGTCCTGCATGTTCTGTCCAGCGTGAGGCAGCGCTACAGCCAAAACCTGAGTCGAGAGGTGCTGGAGGTTGCCCTGACTTTCTTAGAATGCAATAGTGACATAATAAGCACAACAGAAGCGCACTACACTGTTTTGTAGcatcgttttttttaattccataaaatataatcaaagcgttaaaaaaaacaagtagctGACAATCATGAagacataatattaaaaagttgttGTTGAAATCATTAAAGTACATTTCATacaaattttattgtttttatttatttatttatttattttttttaaacccccGTGGTTCAGCATTAAAAGAGCACACAGATGTACGGTATTTTCTTAAGTGTTATTTTTGACGCCAGTTTATCTCTGTAGTAGATTAAACAAACTTTGAATAATTGAGTATTTGTACCCTTTAGTCCAAATGTTATAGCCCTGttgaaaaggttttaaaataataggaGCTGGAAGCAACCCGTTTCCTTTCACTTCCATTATGCTGCAAAGAGTGTCCTGGGACTTTGTTGTTAAAGCTTCTAAGAATCCTTTCAGAAAGCTCCTAATTTATCTTAAAATTCTACATAGGATTTCTACACAtatatatccacacacacacacacacacacacacacacacacacacacatatatatataggatttctacacatgtgtatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacacacattttttccaGTTACCAAAGATGTTAGTGTACTTAATTTAGCGCTATAACATGTTGGAGATTGCATATCTCTAATAAAATGAGTCACAAACACGA

Function

NR:

description
CST complex subunit STN1-like

GO:

id name namespace
GO:0010833 telomere maintenance via telomere lengthening biological_process
GO:0043047 single-stranded telomeric DNA binding molecular_function

KEGG:

id description
K23312 STN1; CST complex subunit STN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244368.1 True 1923 mRNA 0.43 9 23059632 23063350
XM_043244458.1 False 1920 mRNA 0.43 9 23059632 23063350

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_5 NA coding upstream 529 23059032 ~ 23059103 (+)
lrrc58a lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937 coding upstream 1476 23054530 ~ 23058156 (+)
fstl1a LOC107566530,LOC107746304,LOC107676844,LOC107746068,LOC107692113 coding upstream 5697 23044523 ~ 23053935 (+)
gja8b cx44.1,LOC107566539,LOC107746070,LOC107746288,LOC107603011,LOC107692191 coding upstream 20610 23037844 ~ 23039022 (+)
bcl9 bcl9,LOC107746285,LOC107676875,LOC107566537,LOC107746055,LOC107692115,LOC107603052 coding upstream 38800 22935869 ~ 23020832 (+)
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding downstream 802 23064152 ~ 23147300 (+)
cfap58 cfap58,LOC107746299,LOC107583211,LOC107659560 coding downstream 142039 23205389 ~ 23276768 (+)
sorcs3 LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478 coding downstream 621445 23684795 ~ 23732246 (+)
caly caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014 coding downstream 1120731 24184081 ~ 24192107 (+)
msx1b msx1b,LOC107569049,LOC107675944,LOC107706889,LOC107684328,LOC107583240,LOC107729361 coding downstream 1152461 24215811 ~ 24218006 (+)
LOC122351271 NA non-coding upstream 15498 23042249 ~ 23044134 (+)
G5289 NA non-coding upstream 193842 22864834 ~ 22865790 (+)
G5264 NA non-coding upstream 250602 22807650 ~ 22809030 (+)
LOC122331092 NA non-coding upstream 301978 22752486 ~ 22757654 (+)
LOC122346574 NA non-coding upstream 318001 22735434 ~ 22741631 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding downstream 85842 23149192 ~ 23153598 (+)
LOC122350314 NA non-coding downstream 90384 23153734 ~ 23154301 (+)
LOC122350307 NA non-coding downstream 117653 23181003 ~ 23182431 (+)
G5548 NA non-coding downstream 407920 23471270 ~ 23471530 (+)
G5553 NA non-coding downstream 425766 23489116 ~ 23491559 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 208239 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1424580 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1439040 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1698192 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2816283 20241818 ~ 20243349 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 479714 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1220132 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1493447 24556797 ~ 24558929 (+)
G5817 NA other downstream 1640498 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 1920696 24984046 ~ 25398340 (+)

Expression


Co-expression Network