irf2a (irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969)


Basic Information

Item Value
gene id irf2a
gene name irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19464300 ~ 19469429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244404.1
TCACTTCCGCGGTCTGCTTCGCGGTGACGTTTTTGCGTCATTCTATAAAACACGAAAGGCAGGATTTGTGGAGCAGTTCAAATgtgcaaattgaaaaaaatcactGCGTTGTTTTTCATAACATGAAGAAAGTAGATCTAAAACGaaacatgaagacattttttgcGTAATTCCAAGACGGGATTTTATAACACGCCTCATCGAGGGATCTTTAGAGGATTATCGGCTACAGTTACAGCATCAAGATGCCAGTGGACAGGATGAGAATGCGCCCCTGGTTGGAGCAACAGATAGAGAGTGGACAAATTCAAGGGTTACACTGGGTCAACGAGGAGAAAAAGATATTTCAGATACCATGGATGCATGCAGCCAGACATGGATGGGATTTAGAAAAGGATGCACCTTTATTCATGAACTGGGCCATTCATACAGGAAAGTATCGTCCAGGCATTGACAAACCAGACCCTAAGACATGGAAGGCGAATTTCCGCTGTGCTATGAATTCTCTACCAGACATTGAGGAAGTGAAAGATAAAAGCATGAAGAGAGGAAGCAATGCCTTCAGAATGTACAGAATGCTTTCCACACATGAAAAAGCTGTTAAGAAAGggaagAAGAAGATGGACCTGGAGCAAAGAACAAAAaGGGTTTTTCAGAAACGGAAAGCTGGCATTCCCAgaagatttaaaatgacaaaagaacaaAGTGAAGAGAACTTAATGGAGGAAACTACACCGGACAGCACTGTAACTGAGCAGGAGAGCTCCCCTGTGCCCACGTCATGTGTGAGGGAGATGGCCGTAGCTGAATTACCAGATGTGTGTGCAGTTGTTGAGGTGGGAACAGAGAATGAAGAACCTGTGTTTAGCTCCACTGAAGTGTGTCTGCCTCTTCAGGACTCCCATGTTTCATCCTACAGTGaAAGTGACACAGAGAGCACATACAGCGAGGAAGACTTGGTACAGCTTCCCCAGGACTTGTCTTTAAATGCTTCACAAAGATCAGCATGTAATTCGGTGTTAAGGATCCCATCCTCAGCTCAATCCTCACCGAACACACTTTTCAActcaacaaaaatcaatttcaaaGTAACCAGCTGCCGAGAGGACTCTCCTCTGTTTGCATACAACACTCCTCCATGGTTTCCCTGCCGGTTTAATTTCCAAAAAGCCACAGACGCGCAAGCCTCGAGCCCCGCCCCCTCACCAGATCTCACCAGCAGCCCGTCTTCTCAGGCAAGTGCGAACGCTAAAGCTGTGGACCTCTCTGTtgccaaacacaaaacactacAGTGAAACACTACTTTAAATTTAGAACTCGCTGCTGTTTAGCTGATATACCTACAACTCATTATTCTGCATTAATCAAGAACTCTCAGGTGCAAGATTTGCCtcaaatgttttcttgtattCGTGTTCAGCTTTTAAAACCAAACAGAGTTCCAAGCTATCTGAATCCGTTAAGACtatttttctgaattattttgCAACACACTACCTCATTCCCATACAGGTGTTAAATACGTACCCTGTATAACTACCTCACGAATGTGACACTTGATCACAAAAGTTGTCCATCTAAGCTAGTAATAATGCAGCACTGGGAGAATATGCTTGTATGAATTTTGCACTGGAGTGACATTTCATACTTGTTGACAGCagatgtaataaaacaaaagaatgaagTAGAACCGTTATTTGGGACATTTTATGGGGAATctgcatgtatatttttctaCAGGACACTGTAGCACAATATTGAGAGTTTTCTTACAGAAATGCTtaaggttttgaacattttaatatgaaattgtCATGTCTGAATACTTTGATTCAGCAAATTTGACATGTATGTCAGAACAACATGAACTGTTTGCCTGGACGCATTGTTTTACTTGAGGTTTAGCTCTCCCATGTCTGTAGGGCTTCTAAATACTTGAATAGAGACGCACTAACTAGAGTATTTGTATTAACTTGTCAAAATGTTCTCACTTCTGTACTGGAAGCCAGTTGTTTTAATGCCAGGAGatatttctttagtttt
>XM_043244412.1
TTCACTTCCGCGGTCTGCTTCGCGGTGACGTTTTTGCGTCATTCTATAAAACACGAAAGGCAGGATTTGTGGAGCAGTTCAAATgtgcaaattgaaaaaaatcactGCGTTGTTTTTCATAACATGAAGAAAGTAGATCTAAAACGaaacatgaagacattttttgcGTAATTCCAAGACGGGATTTTATAACACGCCTCATCGAGGGATCTTTAGAGGATTATCGGCTACAGTTACAGCATCAAGATGCCAGTGGACAGGATGAGAATGCGCCCCTGGTTGGAGCAACAGATAGAGAGTGGACAAATTCAAGGGTTACACTGGGTCAACGAGGAGAAAAAGATATTTCAGATACCATGGATGCATGCAGCCAGACATGGATGGGATTTAGAAAAGGATGCACCTTTATTCATGAACTGGGCCATTCATACAGGAAAGTATCGTCCAGGCATTGACAAACCAGACCCTAAGACATGGAAGGCGAATTTCCGCTGTGCTATGAATTCTCTACCAGACATTGAGGAAGTGAAAGATAAAAGCATGAAGAGAGGAAGCAATGCCTTCAGAATGTACAGAATGCTTTCCACACATGAAAAAGCTGTTAAGAAAGggaagAAGAAGATGGACCTGGAGCAAAGAACAAAAAAACGGAAAGCTGGCATTCCCAgaagatttaaaatgacaaaagaacaaAGTGAAGAGAACTTAATGGAGGAAACTACACCGGACAGCACTGTAACTGAGCAGGAGAGCTCCCCTGTGCCCACGTCATGTGTGAGGGAGATGGCCGTAGCTGAATTACCAGATGTGTGTGCAGTTGTTGAGGTGGGAACAGAGAATGAAGAACCTGTGTTTAGCTCCACTGAAGTGTGTCTGCCTCTTCAGGACTCCCATGTTTCATCCTACAGTGaAAGTGACACAGAGAGCACATACAGCGAGGAAGACTTGGTACAGCTTCCCCAGGACTTGTCTTTAAATGCTTCACAAAGATCAGCATGTAATTCGGTGTTAAGGATCCCATCCTCAGCTCAATCCTCACCGAACACACTTTTCAActcaacaaaaatcaatttcaaaGTAACCAGCTGCCGAGAGGACTCTCCTCTGTTTGCATACAACACTCCTCCATGGTTTCCCTGCCGGTTTAATTTCCAAAAAGCCACAGACGCGCAAGCCTCGAGCCCCGCCCCCTCACCAGATCTCACCAGCAGCCCGTCTTCTCAGGCAAGTGCGAACGCTAAAGCTGTGGACCTCTCTGTtgccaaacacaaaacactacAGTGAAACACTACTTTAAATTTAGAACTCGCTGCTGTTTAGCTGATATACCTACAACTCATTATTCTGCATTAATCAAGAACTCTCAGGTGCAAGATTTGCCtcaaatgttttcttgtattCGTGTTCAGCTTTTAAAACCAAACAGAGTTCCAAGCTATCTGAATCCGTTAAGACtatttttctgaattattttgCAACACACTACCTCATTCCCATACAGGTGTTAAATACGTACCCTGTATAACTACCTCACGAATGTGACACTTGATCACAAAAGTTGTCCATCTAAGCTAGTAATAATGCAGCACTGGGAGAATATGCTTGTATGAATTTTGCACTGGAGTGACATTTCATACTTGTTGACAGCagatgtaataaaacaaaagaatgaagTAGAACCGTTATTTGGGACATTTTATGGGGAATctgcatgtatatttttctaCAGGACACTGTAGCACAATATTGAGAGTTTTCTTACAGAAATGCTtaaggttttgaacattttaatatgaaattgtCATGTCTGAATACTTTGATTCAGCAAATTTGACATGTATGTCAGAACAACATGAACTGTTTGCCTGGACGCATTGTTTTACTTGAGGTTTAGCTCTCCCATGTCTGTAGGGCTTCTAAATACTTGAATAGAGACGCACTAACTAGAGTATTTGTATTAACTTGTCAAAATGTTCTCACTTCTGTACTGGAAGCCAGTTGTTTTAATGCCAGGAGatatttctttagtttt

Function

symbol description
irf2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell population proliferation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human IRF2 (interferon regulatory factor 2).

NR:

description
PREDICTED: interferon regulatory factor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244404.1 True 2043 mRNA 0.42 9 19464301 19469429
XM_043244412.1 False 2032 mRNA 0.42 9 19464300 19469429

Neighbor

gene id symbol gene type direction distance location
tenm3 LOC107737101,LOC107670970 coding upstream 29578 19191093 ~ 19434722 (+)
spcs3 spcs3,LOC107752235,LOC107670941,LOC107550835,LOC107737105,LOC107676690,LOC107558782 coding upstream 591452 18868682 ~ 18872848 (+)
wdr17 wdr17,LOC107670895,LOC107676687 coding upstream 605355 18839950 ~ 18858945 (+)
cep44 LOC107676682,LOC107558780,LOC107670817,LOC107737107,LOC107752226 coding upstream 770912 18687317 ~ 18693388 (+)
galnt7 galnt7 coding upstream 866663 18584156 ~ 18597637 (+)
sod3b LOC107671542,LOC107748835,LOC107574198 coding downstream 55419 19524848 ~ 19526586 (+)
LOC122331797 aip,LOC107748827,LOC107737096 coding downstream 60958 19530387 ~ 19535903 (+)
lgi2b lgi2b,LOC107550949,LOC107671185,LOC107748826 coding downstream 69902 19539331 ~ 19544378 (+)
ccdc149b LOC107748825,LOC107671163,LOC107559643 coding downstream 75436 19544865 ~ 19552166 (+)
si:ch211-113e8.11 LOC107671245,LOC107552526,LOC107748836,LOC107559641 coding downstream 117146 19586575 ~ 19589162 (+)
LOC122333031 NA non-coding upstream 287473 18993761 ~ 19176827 (+)
G4361 NA non-coding upstream 716547 18747234 ~ 18747753 (+)
G4360 glra3,LOC102780741,LOC101174559,LOC102299625 non-coding upstream 741005 18723075 ~ 18723295 (+)
G4356 NA non-coding upstream 749069 18714947 ~ 18715231 (+)
G4345 NA non-coding upstream 755871 18706209 ~ 18708429 (+)
G4531 NA non-coding downstream 55117 19524546 ~ 19524780 (+)
G4553 NA non-coding downstream 104982 19574411 ~ 19574760 (+)
G4579 NA non-coding downstream 273733 19743162 ~ 19778083 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding downstream 501347 19970776 ~ 19972265 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding downstream 509540 19978969 ~ 19980622 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1179656 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 1565754 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 1853555 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 3394385 16064271 ~ 16069915 (+)
G3647 NA other upstream 3810919 15653093 ~ 15653381 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 51655 19521084 ~ 19522399 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 246124 19715553 ~ 19777050 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 673032 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 772389 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1852033 21321462 ~ 21361440 (+)

Expression


Co-expression Network