exosc9 (exosc9,LOC107656918,LOC107746036,LOC107591532,LOC107702358)


Basic Information

Item Value
gene id exosc9
gene name exosc9,LOC107656918,LOC107746036,LOC107591532,LOC107702358
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11494289 ~ 11498109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244592.1
GCGTCATAACAGTGCGCGAGTTCTACGCTGAATGAAGCGTGCCGGAGGATGCAGCGGTAGATCCGTGTTTATTTGACGTTTTTAGCCTGTCAAAATGAGGGATACTCCGCTTTCAAACTGCGAGAGGCGTTTTCTTCTTAAAGCTATAGAAGAGAAAAAACGCTTAGATGGGAGACAAACATATGATTACCGGaatataaaaatcacttttggAACTGATTATGGCTGCTGCGTCGTTGAACTTGGGAAAACAAGgGTGTTGTGTCAGGTGTCTTGTGAGCTGGTTCCTCCGAAAGATTCTCGCCCCACAGAAGGcatcatgttttttaatttggaGTTGTCTCCCATGGCATCACCAGTCTTTGAGCCAAACAGGCAGTCAGAATTGCTGGTGACCTTAAATAGACAGCTTGAGAGGTGTCTGAGGAATTCTAAATGCATAGACACAGAGTCTCTCTGTGTAGTTTCAGGAGAAAAGGTTTGGCAAATACGGGTTGATGTCCATGTGTTAAATCATGACGGAAACTTGATGGATGCAGCAAGCATTGCTGCCATATCCGCTCTCTCACATTTTAGGCGACCGGATGTTGCTATTCAGGGAAGAGACGTCACCGTGTTCAGCCCAGAGGAAAGAGATCCTATTCCGCTGAGCATATATCACATGCCTATATGTGTCAGCTTCGCCTTCTTCCTGCAGGGTACATATTTGCTCGTGGACCCTTGTGAACGAGAAGAGAGAGTGAAGGATGGTTTATTGGTGATAGCCATGAACAAGCATAGAGAGATCTGCTCCATTCAGTCTAGTGGAGGGATCATGCTTCTGAAAGACCAGGTTTTAAGATGCAGCAAAATAGCAAGCGTAAAAGTTTCTGAAATTACAGAGCTCATCAACAAAGCCTTAGAGAATGACAGAAAAATCAgAAAGGAGGGTGGAAAGTTTGGCTTTGCTGAGTCCATGACCAAAGAGCGAATCACAACTCTTAAGAGAGACGAAGCCCCGGTGGAGATGACAGATGTCGAAGAGACTGCCAATGAGATTGTGAACAAAACAGAAACTCCCACAAAAGCGGTTTCTTCTCCTGTTCTTGTTGCAATGGGAACTGCACAGGTAGGTGAGGGCCTCGTGAATTCATGGGGACTCGATGAGGACGAAGAGGATGAACCTCAGACAGAGGACACAAAAACAGATGAAGTTATGGTAATCTCTGACAGTGAAGAGGAGGAAGTTGTCATTCTTAATGAAGAAGCCCAgaaatccACAAAGcctaaactaaaatgaactCATGCACTGCAGAGAAAAGAGATGATCATACATCAGACTCCCATACCACTGGACActgtttctttttgtattataaaataaaactaatacgGAAAAATT
>XM_043244668.1
ATAACAGTGCGCGAGTTCTACGCTGAATGAAGCGTGCCGGAGGATGCAGCGGTAGATCCGTGTTTATTTGACGTTTTTAGCCTGTCAAAATGAGGGATACTCCGCTTTCAAACTGCGAGAGGCGTTTTCTTCTTAAAGCTATAGAAGAGAAAAAAGTAACGCTTAGATGGGAGACAAACATATGATTACCGGaatataaaaatcacttttggAACTGATTATGGCTGCTGCGTCGTTGAACTTGGGAAAACAAGgGTGTTGTGTCAGGTGTCTTGTGAGCTGGTTCCTCCGAAAGATTCTCGCCCCACAGAAGGcatcatgttttttaatttggaGTTGTCTCCCATGGCATCACCAGTCTTTGAGCCAAACAGGCAGTCAGAATTGCTGGTGACCTTAAATAGACAGCTTGAGAGGTGTCTGAGGAATTCTAAATGCATAGACACAGAGTCTCTCTGTGTAGTTTCAGGAGAAAAGGTTTGGCAAATACGGGTTGATGTCCATGTGTTAAATCATGACGGAAACTTGATGGATGCAGCAAGCATTGCTGCCATATCCGCTCTCTCACATTTTAGGCGACCGGATGTTGCTATTCAGGGAAGAGACGTCACCGTGTTCAGCCCAGAGGAAAGAGATCCTATTCCGCTGAGCATATATCACATGCCTATATGTGTCAGCTTCGCCTTCTTCCTGCAGGGTACATATTTGCTCGTGGACCCTTGTGAACGAGAAGAGAGAGTGAAGGATGGTTTATTGGTGATAGCCATGAACAAGCATAGAGAGATCTGCTCCATTCAGTCTAGTGGAGGGATCATGCTTCTGAAAGACCAGGTTTTAAGATGCAGCAAAATAGCAAGCGTAAAAGTTTCTGAAATTACAGAGCTCATCAACAAAGCCTTAGAGAATGACAGAAAAATCAgAAAGGAGGGTGGAAAGTTTGGCTTTGCTGAGTCCATGACCAAAGAGCGAATCACAACTCTTAAGAGAGACGAAGCCCCGGTGGAGATGACAGATGTCGAAGAGACTGCCAATGAGATTGTGAACAAAACAGAAACTCCCACAAAAGCGGTTTCTTCTCCTGTTCTTGTTGCAATGGGAACTGCACAGGTAGGTGAGGGCCTCGTGAATTCATGGGGACTCGATGAGGACGAAGAGGATGAACCTCAGACAGAGGACACAAAAACAGATGAAGTTATGGTAATCTCTGACAGTGAAGAGGAGGAAGTTGTCATTCTTAATGAAGAAGCCCAgaaatccACAAAGcctaaactaaaatgaactCATGCACTGCAGAGAAAAGAGATGATCATACATCAGACTCCCATACCACTGGACActgtttctttttgtattataaaataaaactaatacgGAAAAATT

Function

symbol description
exosc9 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC9 (exosome component 9).

NR:

description
PREDICTED: exosome complex component RRP45

GO: NA

KEGG:

id description
K03678 RRP45, EXOSC9; exosome complex component RRP45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244592.1 True 1381 mRNA 0.44 12 11494289 11498109
XM_043244668.1 False 1380 mRNA 0.44 12 11494294 11498109

Neighbor

gene id symbol gene type direction distance location
limch1a LOC107754143,LOC107656319,LOC107591530,LOC107746015,LOC107702273,LOC107551594 coding upstream 4711 11446738 ~ 11489578 (+)
rnf38 rnf38,LOC107656328,LOC107591527,LOC107754141,LOC107702356,LOC107551561 coding upstream 50824 11417077 ~ 11443465 (+)
slc25a51a slc25a51a,LOC107551570,LOC107754139,LOC107656936,LOC107746048,LOC107702292,LOC107591528 coding upstream 93039 11396632 ~ 11401250 (+)
trnap-agg NA coding upstream 183825 11310393 ~ 11310464 (+)
si:dkey-192k22.2 NA coding upstream 191804 11295411 ~ 11302485 (+)
ptpn9b LOC107551593,LOC107746013,LOC107702357,LOC107754144,LOC107591531 coding downstream 474 11498583 ~ 11515686 (+)
tyrp1b tyrp1b,LOC107656198,LOC107551586,LOC107591533,LOC107702360 coding downstream 101170 11599279 ~ 11607198 (+)
clockb LOC107656111,LOC107591535,LOC107702364,LOC107754154 coding downstream 144410 11642519 ~ 11654574 (+)
clrn2 clrn2,LOC107746045,LOC107702302,LOC107754181,LOC107551567,LOC107591582,LOC107656264 coding downstream 176891 11675000 ~ 11676787 (+)
exoc1l si:dkey-245p14.4,LOC107591538,LOC107754188,LOC107551572,LOC107656282,LOC107746044,LOC107702277 coding downstream 184047 11682156 ~ 11683862 (+)
G2472 NA non-coding upstream 109276 11383797 ~ 11385013 (+)
G2468 NA non-coding upstream 110902 11383031 ~ 11383387 (+)
G2454 NA non-coding upstream 142632 11350900 ~ 11351657 (+)
G2449 NA non-coding upstream 152541 11339295 ~ 11341748 (+)
G2430 NA non-coding upstream 178935 11310593 ~ 11315354 (+)
G2511 NA non-coding downstream 135817 11633926 ~ 11634160 (+)
G2512 NA non-coding downstream 137379 11635488 ~ 11635889 (+)
G2518 NA non-coding downstream 179974 11678083 ~ 11678450 (+)
G2623 NA non-coding downstream 240875 11738984 ~ 11745961 (+)
G2625 NA non-coding downstream 246767 11744876 ~ 11763334 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other upstream 512933 10844956 ~ 10981356 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 1004205 10483640 ~ 10490084 (+)
G2253 NA other upstream 1096249 10397373 ~ 10398040 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 1159087 10256662 ~ 10335202 (+)
G2230 NA other upstream 1248711 10245157 ~ 10245578 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 213831 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 275847 11773956 ~ 11783070 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other downstream 339497 11837606 ~ 11844060 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 1146570 12644679 ~ 12658507 (+)
dnah6 dnah6,LOC106610484 other downstream 1161153 12659262 ~ 12724458 (+)

Expression


Co-expression Network