si:dkey-9i23.8 (LOC107679872,LOC107749759,LOC107556828,LOC107552182)


Basic Information

Item Value
gene id si:dkey-9i23.8
gene name LOC107679872,LOC107749759,LOC107556828,LOC107552182
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20203335 ~ 20208131 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244737.1
ATGTCTTCGGTGAACGCGTCAGATAATATAACGCAATCTGCAGAGGATTACTGGTTCAAAATTGAGAAGTCTGTGCTTGCTCCCATCCTCACCACTGAGATGGTACTGGGTGTTTTGGGAAATGGACTAGTTTTGATAGTCAAAGTAGCgcgtaaAGACCATTTTCATTGCCTTTACTGGCTGCCACTTTTCAGTCTCACGATCTCAGATTTCCTATGCTCCATCCTCATAATCTGTGGCTCTCTCTTAGCCTTGCTGACTGAAGGTCAGATTTCACCGTGGTGTGAGGTGGTGAGCTTGCTAAAGTTCACCTTCATCACCTCTTCCATTGGAAGCATAGCTGTTCTCTGCATTCAGAGATTTATGGGAATTCCTTCTAAAGGTAAAAAGCTGTCCGTTCTCATGGCTGTGGCATGTGTGGCATCGTGGTGTACAGGAACTATATTTGGAGCAGTGCCCGTAGCCTACAGATGGATAAGGTACGATCCAGCGGAAATGCTGTGTGCAGTGTTCTGGGAAAACAGTTACTCTGACATGCTGGTTTACATCCTCTGTGCCTTCTCCATCTGCATCTTCGCCCCGTTTCTCCTCATAGTCTCCTGCTCCGTCCTGACTTGTGTTGGCTTCGGAAAAGACTGTTCCAGCCAGGGTGACCTGTCCTCTATCACACCACTGCTGGTGATCTTGTATCTGCTCTGCTGTGTTCCCTTTGCTGCATCTGAGTTGGTTCTCCTTGGAAGGCCTGATTTGTCCCCATCCCCTCAATGGCTGCGATCGCTATCATCAGTAATGACGTATCTGGACTGTTCTTTAAACCCCTTCATCTACTGCACAAATAAAGACTTCCGAAAAGCAGTACTCGTACTCGTATGGAACAAAAGGAGATCAACCTTTCCTGATCCAGTGCTGACTGGCGTCACGAGGCTTGAAGCTTGAAGATATTCAaccaataaaa

Function

NR:

description
transmembrane protein 187

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244737.1 True 955 mRNA 0.47 7 20203335 20208131

Neighbor

gene id symbol gene type direction distance location
tcirg1a tcirg1a,LOC107679885,LOC107749787,LOC107551357 coding upstream 29749 20163529 ~ 20173586 (+)
tmem109 LOC107679866,LOC107750001,LOC107552630,LOC107674242 coding upstream 55180 20146023 ~ 20148155 (+)
tmem176 LOC107679884,LOC107749825 coding upstream 61602 20139791 ~ 20141733 (+)
trnak-cuu NA coding upstream 90821 20112442 ~ 20112514 (+)
si:ch211-89o9.6 LOC107749865,LOC107714238,LOC107551277,LOC107674264,LOC107551252 coding upstream 91097 20106848 ~ 20112238 (+)
si:dkey-9i23.6 NA coding downstream 923 20209054 ~ 20215739 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC107664566,LOC107551445,LOC107556825,LOC108434786,LOC108262771 coding downstream 36609 20244740 ~ 20265069 (+)
slc43a1b slc43a1b,LOC107664571,LOC107551476,LOC107730511,LOC107674269,LOC107556815 coding downstream 60912 20269043 ~ 20281302 (+)
tmx2b tmx2b,LOC107664575,LOC107674258,LOC107556817,LOC107730509,LOC107551492 coding downstream 76111 20284242 ~ 20288623 (+)
cryba1l2 cryba1l2,LOC107556821,LOC107664562,LOC107674250,LOC107551533,LOC107746552 coding downstream 143519 20351650 ~ 20355234 (+)
G4686 rgs12b,LOC107749922,LOC107679871,LOC107551217 non-coding upstream 202787 19999341 ~ 20000548 (+)
G4680 NA non-coding upstream 218354 19984725 ~ 19984981 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding upstream 220208 19982804 ~ 19983127 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding upstream 222713 19978969 ~ 19980622 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding upstream 231070 19970776 ~ 19972265 (+)
G4817 NA non-coding downstream 145847 20353978 ~ 20354347 (+)
G4820 NA non-coding downstream 149809 20357940 ~ 20417720 (+)
G4823 NA non-coding downstream 157728 20365859 ~ 20366583 (+)
G4829 NA non-coding downstream 169194 20377325 ~ 20379332 (+)
LOC122345303 NA non-coding downstream 193720 20401851 ~ 20404258 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 57479 20142461 ~ 20145856 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 426285 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 680936 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1918691 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 2304789 17896535 ~ 17898546 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 33687 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1113331 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1382746 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1424084 21632215 ~ 21635052 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 2632557 22840688 ~ 22851393 (+)

Expression


Co-expression Network