LOC122348874 (LOC107552383)


Basic Information

Item Value
gene id LOC122348874
gene name LOC107552383
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21411863 ~ 21415844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244768.1
gtaacatctgaagccacgactcttactacaataccttcaacttcagagagtacaccagcacaaaccacaagtacagcttcatcaaccacatctccaacaacaagcaatccaacaacatcaGCAGCTGTAACTTCTGAATCAACTACTTTTACTAAAACAATATCTAcaacttcagagagtacaccagcaGAAACCACATCTACAATTTCACAAACCACAATTACAGCTTTACCAACTGCATCTACAGCAACAAGCATTCCAATAACATCAGCAGCTGCAACTTCTGGACCCACTACTCTTAGTACAATACCTTTAATTTCAGAGGGTACAACAGCAAGAGCcacaactacagcttcatcaactGCTTCTACAACACTGAGAAATCCAACAACATCAGCAGCTGTAACTTCTGAACCTACTACTCCTACATCAAAAACAATGCCTACAACTTCAGAGGGTACAACAGTAGGAACCATAACTGCAGCTTTATCATCCGCATCTACAACAGCGAGCAAGAGTACAACAGCTGAAAGCACAACTACAGCTCCATCAGCCACATCTTTAACAATGAGCAATCTAACAAACTCAGCAGCTGCAACGTCTGATCCCACTACTATTTCGACAACAAAAATGCCTACAACTTCAGAGATTACAACAGCAAAATCCACAACTACAGTTTCATCAACTGCTTCTACAACACTgagcaatccaacaacatcaGCAGCTGCAACTTCTGATTCCACTACTCTTTCGACAACAACAATGCCTACAACTTCAGAGATTACAACAGCAAGAGCCACAACTACAGTTTCATCAACTGCCTCTACAACACTGAACAATCCAATAACATCAGCAGCTGTAACTTCTGAACCTACAACTCCTACTTCAAAAACAATGCCTACAACTTCAGAGGGCACAACAGTAAGAACCACAACTGCAGCTTTATCATCTTCGTCTATAACAGCGAGCAAGAGTACACCAGCTGAAAGCACAACTACAGCTCCATCAGCCACATCTTTAACAATGAGCAACTCAGCAGCTGCAACTTCTGTTCCCACTGCTATTTCGACAACAACAATTCCTACAACTTCAGAGATTACAACAGCAAAAGCCACAATTACAGCTCTATCAACTGCTTCTACAACACTGAGGAATCCAACAACAGCAACATCAGCAATTTCAGAATCCACAGCTATTACTTCAACAACTATGTCTACAGATTCAGGGATTACAACAGTTAAAACTACAGCTTCCACAACTGCAGCTGTATCTTCCACTATAACAACAGTTCCTGTGTCATCTGAAGCTTTGAGTACAACAGCATCTCAAACCAAATTGCTTCTAGCAACCACATCTACTGGAACTCTTGCATCAGCAGTTGTGACTTCAGAAGTAACAGCATCAGGTAGTACAACTACACCTGCAGCAAGCACAACTGCAGCTTCCATGACCACAGTGGGGCCTTCCACTACTGTGACAACAGCTTCCGAAACTAAGACTGCATCCTCAACATCTACGCTTTCCTCACCTGCGATAGTGCCTTCTACTGCTACGGCATCTCCAACTTCATCTGAATCTCCACTTCAAACCACATCAATATTTGTCAACCCTGCTCCAGTAAAGTCTACAACTTTAGAAAGCACAACTGCTCATACAGCATCGACGTCAGCTACCACAAAGTTACCTTCAACTGTTACATCTGCTGCTACCTCATCTGAAGCTCCAAGTACAAAAACAGCCGAAACCACAATTTCATTTGCAGCCACGACTACTGAAACCTCAACTCTTGCTTCACTACCAATGTCTACAACTTCAGGCAGTACACCTGCACCCGCAGCATCCAGTTTTACATCTTCCTCCTCTATGATTGGAGCTCCTACTGCTTTTTCATCTTCAATCTCATCTCAAACTACAAGTACAACAATACAAGGTCCAACCATATCCACAATTACAGCCAGAACATCTGCAATTTCATCAACAACAGAAAATCCAGCTCAAACCCCAGCTTCAATTCTAAGCACAAGCACTGCTACAGTGGCCACAACAACTGCATTCCAAATAACATCATTACCTCTATCAAGCACAACTGTTGCTTTCACTAATACAGCTCCAACTCTAAGCCAAGCAACACTCCCTACCACAACAAATGCACCTCCAATAATTACAACTGTGTCTCTGGAGACCATAACTGTTGCTGTAACAATTATGCCCATGTCCTCATCACATGTAACTATATTTCCAACTTTAACTccaacaaaaacaactgaacCTCCAAGAACCTCAAATGCACCCATTACAACCATGACTGTTCTTCCTACCAATACAGTTCCAGTTGATATCTCAGCTACTGCTCCAAGCACAACAAGCTCAGCTGCAGCTCAAATGACAACTGCATTTCAAGTGACAACAGgagatcttttaaaaacaactgttgCTTTTACAAGTACATCTTCTGCTCCAGCCACACTTGAActttcaacaaaaacaacttcaaGCCCAAGCATGGATTCAGAAACTACAACTGCATCAACAACTACCACTGGAATTATTACAGGTCTTGCTAATACAGCAGAATTTCCAGTAGCTCCAATAACATTAGGTTcaaacacaaatacatcaaCATCACCATCATCTACAGTTCTAGGTcaaacattcataaaaacaacacCAGTTGAAACTCCTATTAGCAATACCACAACTCTGAACAATACAACAAAAGCAGATGCATTTGTTACATTTCAAAGTACTTCAAATCCAGAAACTTCAAACATATCCAAAACATTGGCATCAAATGTGTCCGGTGCAGCAACAGTCACAACCAAACTGATATTTTCCAACTTGTCATCTCTGCCCACTGAAACTTTGGTCCAAGGTGCTATTAGTACTCTAATTACATCTAGAGAGTCACAACTCAATGAATCACTGCAGATTGTCAGTTTTATCTATCAGAAAATCTCTGAAACTTCCTATGCTGtcatatttactattattttgaataatgtcaGCATACCTAAGGATCCTGAGCTAAGAAACAAAAGTTATGTTCAAGTGCaagatttaattaataatgcgttgaaCACTCTTCTAAACGAGCCTGGCAAGCAAGATTTTGAACCCAAGTCCTCCAACTTCACGAGCACTTCAAACCAGATTGATGGCAGGATGGAATACGTCTTCCAGAATGGAAATGCCATACAACCATGCCATGAGCCAGTCAGCATATCTAAGCTCTGA

Function

NR:

description
PREDICTED: mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244768.1 True 3234 mRNA 0.41 5 21411863 21415844

Neighbor

gene id symbol gene type direction distance location
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding downstream 26939 21381701 ~ 21384924 (-)
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding downstream 716096 20693265 ~ 20695767 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 961744 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 977492 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 984052 20413591 ~ 20427811 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 123922 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 152258 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 206521 21622365 ~ 21663567 (-)
LOC122342104 LOC107689469,LOC107551743,LOC107719777,LOC797711,LOC107711522,LOC107567046,LOC107692200 coding upstream 260243 21676087 ~ 21679530 (-)
mogs mogs,LOC107719770,LOC107689467,LOC107551727,LOC107567052,LOC107692169 coding upstream 271383 21687227 ~ 21691373 (-)
LOC122349798 NA non-coding downstream 692973 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 709565 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 942848 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 951679 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 967069 20442952 ~ 20444794 (-)
G5047 NA non-coding upstream 197074 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 628058 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 932670 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 996618 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 1018769 22434613 ~ 22438354 (-)
ctnna2 ctnna2,LOC107689479 other downstream 1292 20906170 ~ 21410571 (-)
G4958 NA other downstream 725123 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1042752 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 1098915 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 1271284 20137035 ~ 20140579 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 133773 21549617 ~ 21564077 (-)
G5104 NA other upstream 302295 21718139 ~ 21766284 (-)
G5108 NA other upstream 308543 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 346037 21761881 ~ 21799744 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 843595 22259439 ~ 22328929 (-)

Expression


Co-expression Network