LOC122348917 (LOC107720307)


Basic Information

Item Value
gene id LOC122348917
gene name LOC107720307
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21808791 ~ 21812589 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244807.1
ATGAAAATACCTCCAACAACCACAATGTCTGAGATGACAATTACTACAAGCTTACCTCTAATGAACATAACTGGTTCAGCACTGGTTACAAGCAAACTGCTGTTCAACTCCTCATCTCCAGTTCCCAGTGAAACTAAGGCCCTCAGTGTTATCAACACTCTTCTGAAATCCAGAGATTCGCTGCTCTACAATTCAGTGCAGGTGCTAAATGTCACCTATGAaaATATCTCAGAGACCTCCTATGCAATCATCTTTACATTTAACCTGATTAACATTAGTATACCAGAGGACCCTGAGCTAAAGAACAGCACCTATCAGCACTTGCagaatgttattaataatgtgTTGAACACACTTCTGAATGAACCTGGCAATGAGGTTCTTGAAGCCAAGTCCTCTACATTCACGATCGAGAGGGTGTTATTTTACATCAGggtaatttttattacatgggGCCCCCTACCAAGTGAGAGTGAAGTTCAAAATTTAGTCAAATCACTTCTGATCCCAAGTCTCAGAGTTGACACAGCACAAACCCTAAGTGACCCTGTGAGCTATGTGAATGTCACCTATGAGAAAATTGCTGATAATTCATATGCCCTCAAATTTGGATTTGAGATCAAGAGTCTATCCATGGCAGAAAAGCTTGAAGTTAGGGATGCCAATTACATGTTCATTCAAAACTCCATAAAAAGAAAGCTGAACCAGATCCTAAGTGACTCTGACACATCTATTGAGTTCAACAAAGCCAGTTTCATAAACAATTCCAGGGAGGTAATTGCAACTGTGGATTATATTTTCCGACAACAAGACATCAAATCACCCAGTGGCTTTCTCCAAGAACTTCTCAAAGTTATGAATATCCCAACAACTCCAGCTCCAACTGTGAATAACCCAACTCAGAAACCTGTAGAAATACCAGATGTGATTGGGAAGGTGATTATCTATATTCAGCTCATATTTATCACACGGGGCCCTATACCAAGTGAGGCGAAAGTCTTAGAGTTGGCTACAAATCTGCTGGCCGTACGTTTCAGAACTAAACGAGAACTAAGGGCACAAACCTTGAGTACCCCTGTGAGCTTTGTGAATGTCTCCTACACAAaactttcTGATACGTCATATGCCCTGGATTTTGGATTTGAAATCAGCAATGTTACCATGTCTGAGAAACTTGAACTCAGGGATACCACATATAAATTAATCCAGGACTCTATAAATAAATTGCTGAATGAGATCCTAAATGAGCCCACTGCCACACCATTTGAGTTCAAAGATGTCAATTTCACGGGTAACTCCACTACTATTCAGGCGAATGTACACTATGTATTCTCAGAAAGTGACATCCAGAAACCAAAACCTATTGCCACAACTACGCctgcagcaacaacaacaacaacaaccaccttTTACTACACAGTGCTAAGCACTACAATCACAAATAACAGCACTAGTGCTGCATGGGTTGTTGCCATCATTGTGCCCTGTGCTATTGCCATCTTCCTCATACCTTGCTGGATTCTCCTGTGTTGTTTGCTTTGTGGTTGCTGTACAGCAATAAGAAGACGGTGGTCCAGAAGACGGTCATATAATGTACAATACACTACTCGAAACAGCCTTTTCTAG

Function

NR:

description
PREDICTED: mucin-3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244807.1 True 1626 mRNA 0.41 14 21808791 21812589

Neighbor

gene id symbol gene type direction distance location
muc13a NA coding downstream 51925 21738022 ~ 21756866 (-)
LOC122348885 NA coding downstream 72083 21734334 ~ 21736708 (-)
LOC122337558 LOC107552383 coding downstream 74078 21713527 ~ 21734713 (-)
si:dkey-56e3.3 LOC107719778,LOC107689468,LOC107552374 coding downstream 96223 21707938 ~ 21712568 (-)
mogs mogs,LOC107719770,LOC107689467,LOC107551727,LOC107567052,LOC107692169 coding downstream 117418 21687227 ~ 21691373 (-)
LOC122348927 NA coding upstream 14967 21827556 ~ 21832934 (-)
LOC122348936 NA coding upstream 20773 21833362 ~ 21847155 (-)
dtx4b dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012 coding upstream 54403 21866992 ~ 21882353 (-)
trnat-ugu NA coding upstream 71529 21884118 ~ 21884190 (-)
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding upstream 77763 21890352 ~ 21900526 (-)
G5047 NA non-coding downstream 188210 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1089901 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1106493 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1339776 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1348607 20459541 ~ 20460184 (-)
G5327 NA non-coding upstream 231313 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 535925 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 599873 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 622024 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 632369 22444958 ~ 22446648 (-)
LOC122348907 NA other downstream 9047 21761881 ~ 21799744 (-)
G5108 NA other downstream 36029 21724387 ~ 21772762 (-)
G5104 NA other downstream 42507 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 244714 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 398220 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 446850 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 460229 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 727095 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 1052242 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 1101311 22913900 ~ 22916405 (-)

Expression


Co-expression Network