CI01000000_10106854_10121986 (SLC7A2)



Basic Information


Item Value
gene id CI01000000_10106854_10121986
gene name SLC7A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10106657 ~ 10123017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000000_10106854_10121986.mRNA
ACTGGCCAATAAGCAATGTGCCAAATACCTACGCCCATCAAAATGCAAGCACTTTATCCCACTATTATGCAATAATGCCTAAGGCTTTTTGTATTATTTTACATTGGGCAATGCTAAAACCTGCTGCTTAAACTGCAGACATGTGCAAGTGAGAACAAAGGCCAAAAGTGTTATTGAATAATACAGTTGTTCTTTTACATGCCTCAAAACGATTCCCTACTGATCTTGTGGAATCAAATCTTTACATTGTGCATTTATTCTGTGCAGTGTTAGTCAAATCATCCCCAAAAATGTTCACCAGACAGATTGGGTCATGGATATGTGAAACATAATAAAGAAAATAAACCTTACTTTCTCTTGGCATATACTCAACGCTAGAAAAACAAATATAGTTAGTGTACTTGATTTATTTATCCCTCTGGTCCTCTTTGTTTAGGGGTCACACTTGGCTCCACCATGGTCAAAAGTGACCGAAGCCTTGAAATGTAACTTTTTTTCAATAATATTTTTGTTCAATAATATTTTTGGATTATTATTTAAGATTTTGAGTGTGTTTTATGATACTATGCAATATTTATAAAATTCTTACTAGCTATTTTTTCCCCATTGAAAATAATACACTTTTTTGTGAATGTGTGAATGGGGTGAATGTGTCTCTTTTGCACTCTTGACATTTTAGAGTGTCACCCCTTCATTGCTGTGCACTTTTTTCTGCACAGTGGCTGATTTGAAGTTTGTACCACCAAAAGATTCTCTGAGTTTTCATATTTCCCATTCATTTCCTATGTCTGTCATTTTTGACCGCAAAGGAGCCAAGTGTGACTTTTTTTTTTTTGACCCTTTTACATATCTGAATCATGTCCATAATTTTTCTGTGCATTCACATAGCTAATGCAACAAAAGTCACCAAGTGTCATCATATTCTGATCAAGCAAACATTTAAAAAGTTCAAAGCGTAAATTTTTTTCTGTCACTTTTGATCGAGTGTTATCTGACAAAATCTGTCTTGACAGTTTGTACTTACAGGAAGAATGCTGGAACATTGCTTTACATTTTGCCGCTCCCTTGTGAGGAGGAAGATTGTGGACCAGGACTGTCTGGAGGAGTCAAAGCTGTGCCGCTGCCTCTCCACTGTTGATCTCATTGCCCTTGGGGTAGGAAGTACACTGGGGGCTGGTGTCTATGTGCTCGCTGGGGAGGTGGCCAAAGGCAATTCTGGCCCCAGTATCGTGGTGTCCTTCCTCATCGCCGCTCTAGCATCTGTGATGGCCGGCCTGTGTTATGCTGAGTTTGGTGCGCGGGTACCCAAGACGGGCTCGGCCTATTTGTACAGCTATGTGACTGTGGGGGAACTCTGGGCCTTCATCACAGGATGGAACCTCATTCTGTCATACGTCATTGGAACCTCTAGTGTGGCACGTGCCTGGAGTGGGACATTTGATGAGCTTATAGGGGGCCACATTGAAAAGTTCTGCAAAATGTACTTCAAAATGAGTTTGCCTGGCCTGGCAGAGTACCCTGATTTCTTTGCTGTCTGCCTGATCTTACTTCTGTCAGGTCTTCTCTCCTTTGGGGTGAAAGAATCAGCTTGGGTCAACAAGATCTTCACAGCTGTAAACGTGCTTGTGCTGATGTTTGTTATCATCTCTGGATTCGTCAAAGGAGATGCGCTCAATTGGAATATTTCAGAAGAATCTCTCATAAACCACACCATTGTCACAAGGAATCTCTCACATACTGCTAATGTCACCAGCGATTACGGGGCAGGGGGCTTTTTGCCTTATGGCTTTGGTGGGACGCTTGCTGGTGCAGCCACGTGCTTTTACGCCTTTGTGGGATTTGACTGCATTGCAACCACAGGCGAGGAGGTGAAGAATCCCCAGAGGGCCATTCCCATTGGTATAGTTGTTTCCCTGCTGGTCTGCTTCCTTGCCTACTTTGGTGTGTCAGCAGCCCTCACCCTCATGATGCCCTACTATCTGCTGGATGAGAGAAGTCCTCTACCCTTGGCTTTTGAATATGTGGGCTGGGGGCCTGCGAAATATGTAGTAGCTGCAGGATCGCTCTGTGCTCTTTCAACCAGTCTGCTGGGCTCCATTTTCCCAATGCCGCGTGTAATCTATGCTATGGCACAGGATGGGGTGCTTTTCAAAGTGTTAGCCCAAATCAATCCTAAGACGAAGACCCCTCTTATTGCTACAATGTCTTCAGGTGTAGTTGCAGTGAGTAAGCGTCAGTCGCCAGTGGCTGCCACTATGGCAGCGGGCACTACCGCGGCTATCATGGCTTTCCTGTTTGACTTGAAAGCGCTGGTGGACATGATGTCTATTGGAACTTTGCTGGCGTACTCATTAGTGGCTGCTTGTGTTCTTATCCTCAGATATCAGCCAGATGCTGTGTTTGAGAGGTCTAGGATCAATGAAGGCAAGGAAGAGGTTGGTGAGTCTGAGCTGACAGAGTCTGAGTCTCATCTGAACATGCTGAAGGATGGAGGAGTAACCCTGCGCTCTCTGCTCAACCCACCACTGCTGCCCACTGAACAGACCTCCACAGCCGTCAATTTGTCTGTTATCATCATGGTGCTTATTGTGTGTGTTGTGAGCACACTCAACACATACTACGGACAGGCCGTTATTGCCATGGAGCCTTGGGCCCTTGGAATCTTGGCCGCATCTCTGTTCGTCTTCATCATGTGCCTCTTTCTAGTTTGCAGACAACCTCAGACAAGGAAGAAAGTTTCCTTTATGGTTCCTCTGTTGCCCTTTCTACCCATCTTAAGTATATTTGTCAACGTGTATCTCATGGTTCAGCTCAGCAGAGACACATGGATCCGTTTCTCCATCTGGATGGCCATAGGCTTCCTCATTTATTTTGGATATGGAATGTGGCATAGTGATGAACGCAAGAGGCATATACAGAACTGTGGTGTTGCAACTGAGAAAAAGATACTGACAGGAAATGTAGGCACTGTGGAGTATGTGACACGCATAGAGAAGACTAGCCCATGTTAAAGAACAGCAGACAAACTCTGATAGTTACTAGCTGTTTCACCAACCAGCTGATAGACCTGAGCTCTGCGTTTACACTCACTGCCATCGTGAACAATCAGTGCTGATGCCCTCACCTGTGATGTGATCATATCATGTAATAGGACATTAGGGGTGTATGATCTGACAATGAAAATTCAATGTGTTGATTATGGAATTAA

Function


symbol description
slc7a2 Predicted to enable L-lysine transmembrane transporter activity; L-ornithine transmembrane transporter activity; and arginine transmembrane transporter activity. Predicted to be involved in L-arginine import across plasma membrane and L-ornithine transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A2 (solute carrier family 7 member 2).

GO:

id name namespace
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000000_10106854_10121986.mRNA True 3208 mRNA 0.44 12 10106657 10123017

Neighbor


gene id symbol gene type direction distance location
CI01000000_10096840_10101549 PDGFRL coding downstream 4899 10096724 ~ 10101758 (-)
CI01000000_09913788_09975299 NA coding downstream 130490 9913659 ~ 9976167 (-)
CI01000000_09530735_09630567 PCDH1B coding downstream 476090 9530735 ~ 9630567 (-)
CI01000000_09506970_09508416 NA coding downstream 597331 9506292 ~ 9509326 (-)
CI01000000_09469075_09494668 NA coding downstream 610677 9469020 ~ 9495980 (-)
CI01000000_10151976_10164598 NA coding upstream 28918 10151935 ~ 10164862 (-)
CI01000000_10168220_10187727 MICU3B coding upstream 45106 10168123 ~ 10187937 (-)
CI01000000_10217060_10219305 NA coding upstream 93818 10216835 ~ 10219305 (-)
CI01000000_10227326_10228613 PFD6, PFDN6 coding upstream 104157 10227174 ~ 10228617 (-)
CI01000000_10235386_10236012 NA coding upstream 112261 10235278 ~ 10236047 (-)
G7879 NA non-coding downstream 1903 10103510 ~ 10104754 (-)
G7907 NA non-coding downstream 23677 10082689 ~ 10082980 (-)
G7906 NA non-coding downstream 24637 10081808 ~ 10082020 (-)
G7905 NA non-coding downstream 25208 10081215 ~ 10081449 (-)
G7904 NA non-coding downstream 29790 10076639 ~ 10076867 (-)
G7884 NA non-coding upstream 24482 10147499 ~ 10149080 (-)
G7924 NA non-coding upstream 97995 10221012 ~ 10222274 (-)
G8016 NA non-coding upstream 221925 10344942 ~ 10345496 (-)
G7946 NA non-coding upstream 246003 10369020 ~ 10371147 (-)
G8028 NA non-coding upstream 311004 10434021 ~ 10434286 (-)
G3931 NA other downstream 3703132 6157013 ~ 6403525 (-)
G3716 NA other downstream 4105888 6000407 ~ 6000769 (-)
G3650 NA other downstream 4565776 5540463 ~ 5540881 (-)
CI01000000_05465020_05466303 NA other downstream 4640141 5464058 ~ 5466516 (-)
G2730 NA other downstream 5716505 4386383 ~ 4390152 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 281311 10407395 ~ 10409950 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 701394 10824324 ~ 10825464 (-)
G8125 NA other upstream 917252 11040269 ~ 11040909 (-)
G8699 NA other upstream 3162307 13272585 ~ 13311429 (-)
G9036 NA other upstream 3603783 13726800 ~ 13727090 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011422 NA coding CM030133.1 CM030133.1 23743078 ~ 23749052 (-)