LOC122349524 (LOC107572981)


Basic Information

Item Value
gene id LOC122349524
gene name LOC107572981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28893141 ~ 28898735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245603.1
ataaaatgtttgaaagcaGGAACTGCTGCACTTTGACTCttagagagaagagagagacggCGAGAACAATGACTTCAACACATTCAGTGAACGATTTGAGAATCGTTCTTCTGGGGAAAACCGGATCAGGAAAAAGTGCAGCAGGAAACACCATCCTGggcaaaaatgcttttgaaagcgTCAACCTCATGAGATCAGCCAATATACTGTGTGAGAAACAGCAAGGATTAGTTCATGGAAGGACTGTCACTATAATTGAGACTCCCGGGCTGTTTAACACAGCTATGAATAAACAGCAGCTGAAGGATGAATTAGAAAAGTGTGTAGAGATGTGCTCTCCTGGTCCTCATGTGTTTCTGCTGGTGCTAAAGCTGGGTGTGAGATTCACAAAAGAGGAGAGAGACGCAGTGAAATGGATACAGGAGAACTTTGGAGAAGAAGCTTTGCGTCGTACCTTCATTCTGTTCACTCACGCTGATCAGCTGAAAGGAAAACCTCTGGACGAGTACATCCATAAAAGCACCTATTTACAGGAAATCGTTGACAGCTATGGAGGCAGATATTACTTATTTgacaatgagaacagaaagaATCAAGATCAGGTCACAGAACTATTGAAAAACCTGAGGAAAAATAATAAGATGAATTACTATACTCTTGAGATGTTTAAATCAACTCAGGCAGGAATTGCGAGGAAGGAGTGGATAAATAAGGTAAAAGTTGTATGTAGCGTTGCAGTGCTGCTTCTCGGCATCGTTTGTGCATTTCTGCTGCTACAGGAGAAGATGTCTTTGCAGCTGTCAGAGATTTCAGAGATGCAGGAGAAAACAGCACCGCAGCTGCTGGAGATTTCGCAGGTGCAAGAGAATTCAATGGCAGGAAAGCATCCAGATCTGAGGATCGTTCTTCTGGGTAAAACTGGATCAGGAAAGAGTGCATCAGGGAACACCATCCTGAACAGAGATGTGTTTACAGTCAAACACTCGCTGAAGTCGGTTACAACGGCCTGTGAGGAGCAAGAAGCAGTTATTGATGGACAAAGCGTATCAGTTACTGACTGTCCCTGTCTGTTTGACCCTTCGGCCAGCCACAGAAACCTACAGATTTTAATACACGAGTGTGTGCGTCTGTCTGCTCCCGGCCCGCATGCTTTTCTGCTGGTTCTGAGACTAGGCATGAAATTtacagaggaggagaaaaacGCCGTGAAATGGATTCAGAGGAGCTTTGGAGAAGATGCTGTGAAGTACACCCTGGTTCTGTTCACTCACGCTGATGCACTGAAGGACAAGCCTGTAGAGCTCTACATCAGCAAAAGCAAAGACCTACAGGAACTGATTCAGACCTGCTACGGCAGATATCACACGTTCAACAACGAACACAGAAATAATAGAGATCAGGTCACACAACTGCTGAAAATGATAGAAAAAATGGTTAATTTTAATGGAGGGGATCACTATGCTAAGAAGTAAAGATTTTTCCGGTCAACTGAAGCGTTATTAACTAATCACACATTTCTCAATAAaccatttacataataataaggAGTCTTTAATTACCTACACAGCCTAATAAGCGCTCAAGCTCAAACATAAAGCTTGCCACGGCGCACCGACAAAAACAGTAAGGAGGCTgcgttaacattttaatatttccataAACTAGTGCTTTCTTTGTTGCCTCATCTCTGTATTAGTGATGCACCTGTGTGTATGTTTCATATGgattacataatatttgttttccatttgaattgGTTTATTTGAAAGTAGACACTTCACTCTCTATTGGTGTATTTTTAATGCCTGTAACGCAAAGTCAACAGAAAGCACGcatttgctttcatt

Function

NR:

description
PREDICTED: GTPase IMAP family member 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245603.1 True 1847 mRNA 0.42 5 28893141 28898735

Neighbor

gene id symbol gene type direction distance location
LOC122355940 NA coding downstream 51606 28809212 ~ 28841535 (-)
LOC122362864 LOC107739961,LOC107574374,LOC107742984,LOC107717634,LOC107574376,LOC107725412,LOC107724128,LOC107576777 coding downstream 216316 28674433 ~ 28676825 (-)
LOC122356533 LOC107571418 coding downstream 229895 28654009 ~ 28663246 (-)
LOC122356692 si:dkey-222h21.3,LOC107659785,LOC107571418,LOC107576777 coding downstream 240958 28645661 ~ 28652183 (-)
LOC122356986 si:dkey-222h21.3,LOC107659785,LOC107571418 coding downstream 249644 28634924 ~ 28643497 (-)
LOC122325105 slc27a1b,LOC107662711 coding upstream 978 28899713 ~ 28913858 (-)
LOC122358117 LOC107571122,LOC107675016,LOC107709529,LOC107560588 coding upstream 16263 28914998 ~ 28924504 (-)
LOC122359935 LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584 coding upstream 25881 28924616 ~ 28928580 (-)
LOC122357989 LOC107571123,LOC107709529 coding upstream 30968 28929703 ~ 28941914 (-)
LOC122360916 LOC107668674,LOC107571136 coding upstream 57572 28956307 ~ 28961850 (-)
G7541 LOC107575099,LOC107576344,LOC107574587,LOC107576324 non-coding downstream 85435 28743444 ~ 28807706 (-)
G7551 NA non-coding downstream 91476 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 92285 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 118975 28773354 ~ 28774166 (-)
G7535 NA non-coding downstream 220507 28670921 ~ 28672634 (-)
G7579 NA non-coding upstream 73159 28971894 ~ 28981118 (-)
G7591 NA non-coding upstream 116930 29015665 ~ 29017156 (-)
G7575 NA non-coding upstream 216761 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 258109 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 392026 29290761 ~ 29291343 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 367590 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 446550 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 501088 28391039 ~ 28392053 (-)
G7475 NA other downstream 644618 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 669894 28220899 ~ 28223247 (-)
LOC122324333 NA other upstream 44253 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 151008 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 169247 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 202951 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 403072 29301807 ~ 29310598 (-)

Expression


Co-expression Network